Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0100
         (666 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          21   8.0  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      21   8.0  
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          21   8.0  

>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = -3

Query: 421 FFHKKYQNLR*YSDKFLSFYRMSVAS 344
           ++HK  +NL  Y+ + L+F  +S+ S
Sbjct: 427 YYHKYKENLPKYTTEELNFPGVSIES 452


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = -3

Query: 421 FFHKKYQNLR*YSDKFLSFYRMSVAS 344
           ++HK  +NL  Y+ + L+F  +S+ S
Sbjct: 427 YYHKYKENLPKYTTEELNFPGVSIES 452


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = -3

Query: 421 FFHKKYQNLR*YSDKFLSFYRMSVAS 344
           ++HK  +NL  Y+ + L+F  +S+ S
Sbjct: 53  YYHKYKENLPKYTTEELNFPGVSIES 78


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,485
Number of Sequences: 438
Number of extensions: 3476
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20099475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)