Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0098
(650 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_UPI00015B4A1E Cluster: PREDICTED: similar to nuclear me... 38 0.21
UniRef50_Q7QJC9 Cluster: ENSANGP00000009456; n=2; Culicidae|Rep:... 37 0.48
UniRef50_UPI000065F5AC Cluster: Inner nuclear membrane protein M... 35 1.5
UniRef50_Q5TZH9 Cluster: Novel protein similar to vertebrate int... 35 1.9
UniRef50_Q7JRE4 Cluster: RE60089p; n=3; Sophophora|Rep: RE60089p... 34 3.4
UniRef50_Q8AXN1 Cluster: Smad1 antagonistic effector; n=3; Xenop... 33 4.5
UniRef50_UPI00006CE532 Cluster: Bromodomain containing protein; ... 33 5.9
UniRef50_Q9Y2U8 Cluster: Inner nuclear membrane protein Man1; n=... 33 5.9
UniRef50_Q9WU40 Cluster: Inner nuclear membrane protein Man1; n=... 33 7.8
>UniRef50_UPI00015B4A1E Cluster: PREDICTED: similar to nuclear
membrane protein XMAN1; n=1; Nasonia vitripennis|Rep:
PREDICTED: similar to nuclear membrane protein XMAN1 -
Nasonia vitripennis
Length = 827
Score = 37.9 bits (84), Expect = 0.21
Identities = 18/33 (54%), Positives = 22/33 (66%)
Frame = +3
Query: 39 LITVKYLRXERYMQRFPNSPSIGPYLKMSRPQR 137
L+TVKYLR ERY +RFP + + LK S QR
Sbjct: 780 LVTVKYLRLERYHERFPEAVNFTTPLKPSNNQR 812
>UniRef50_Q7QJC9 Cluster: ENSANGP00000009456; n=2; Culicidae|Rep:
ENSANGP00000009456 - Anopheles gambiae str. PEST
Length = 661
Score = 36.7 bits (81), Expect = 0.48
Identities = 17/35 (48%), Positives = 23/35 (65%)
Frame = +3
Query: 36 RLITVKYLRXERYMQRFPNSPSIGPYLKMSRPQRS 140
RL+++K+LR ERY+QRFP S + LK S S
Sbjct: 625 RLVSIKFLRLERYLQRFPRSLAGPACLKPSNKNNS 659
>UniRef50_UPI000065F5AC Cluster: Inner nuclear membrane protein Man1
(LEM domain-containing protein 3).; n=1; Takifugu
rubripes|Rep: Inner nuclear membrane protein Man1 (LEM
domain-containing protein 3). - Takifugu rubripes
Length = 801
Score = 35.1 bits (77), Expect = 1.5
Identities = 15/30 (50%), Positives = 21/30 (70%)
Frame = +3
Query: 36 RLITVKYLRXERYMQRFPNSPSIGPYLKMS 125
+L+TVKYLR +RY QRFP + + L+ S
Sbjct: 771 KLVTVKYLRLDRYHQRFPQAHACSTPLRAS 800
>UniRef50_Q5TZH9 Cluster: Novel protein similar to vertebrate
integral inner nuclear membrane protein; n=1; Danio
rerio|Rep: Novel protein similar to vertebrate integral
inner nuclear membrane protein - Danio rerio (Zebrafish)
(Brachydanio rerio)
Length = 841
Score = 34.7 bits (76), Expect = 1.9
Identities = 16/30 (53%), Positives = 20/30 (66%)
Frame = +3
Query: 36 RLITVKYLRXERYMQRFPNSPSIGPYLKMS 125
+L+TVKYLR +RY QRFP + LK S
Sbjct: 788 KLVTVKYLRLDRYHQRFPQALGSNTPLKPS 817
>UniRef50_Q7JRE4 Cluster: RE60089p; n=3; Sophophora|Rep: RE60089p -
Drosophila melanogaster (Fruit fly)
Length = 650
Score = 33.9 bits (74), Expect = 3.4
Identities = 15/25 (60%), Positives = 19/25 (76%)
Frame = +3
Query: 36 RLITVKYLRXERYMQRFPNSPSIGP 110
RLI++K+LR ERY+ RFP PS P
Sbjct: 614 RLISIKFLRLERYLSRFP-KPSAEP 637
>UniRef50_Q8AXN1 Cluster: Smad1 antagonistic effector; n=3;
Xenopus|Rep: Smad1 antagonistic effector - Xenopus
laevis (African clawed frog)
Length = 784
Score = 33.5 bits (73), Expect = 4.5
Identities = 15/30 (50%), Positives = 20/30 (66%)
Frame = +3
Query: 36 RLITVKYLRXERYMQRFPNSPSIGPYLKMS 125
+L+TVKYLR +RY RFP + + LK S
Sbjct: 732 KLVTVKYLRLDRYHHRFPQALTCSTPLKPS 761
>UniRef50_UPI00006CE532 Cluster: Bromodomain containing protein; n=1;
Tetrahymena thermophila SB210|Rep: Bromodomain containing
protein - Tetrahymena thermophila SB210
Length = 2113
Score = 33.1 bits (72), Expect = 5.9
Identities = 15/57 (26%), Positives = 32/57 (56%)
Frame = +3
Query: 39 LITVKYLRXERYMQRFPNSPSIGPYLKMSRPQRSWDE*SNMMNLFK*NFCHNGASLQ 209
LI L+ E+Y Q++PNS ++ +PQ+++++ +N N + +N ++ Q
Sbjct: 1917 LINNPLLQAEQYQQKYPNSQVAYNAIQQQKPQQNYNQINNNFNQQNQQYQYNNSAYQ 1973
>UniRef50_Q9Y2U8 Cluster: Inner nuclear membrane protein Man1; n=9;
Coelomata|Rep: Inner nuclear membrane protein Man1 -
Homo sapiens (Human)
Length = 911
Score = 33.1 bits (72), Expect = 5.9
Identities = 15/30 (50%), Positives = 20/30 (66%)
Frame = +3
Query: 36 RLITVKYLRXERYMQRFPNSPSIGPYLKMS 125
+L+TVKYLR +RY RFP + + LK S
Sbjct: 859 KLVTVKYLRLDRYHHRFPQALTSNTPLKPS 888
>UniRef50_Q9WU40 Cluster: Inner nuclear membrane protein Man1; n=11;
Euteleostomi|Rep: Inner nuclear membrane protein Man1 -
Mus musculus (Mouse)
Length = 921
Score = 32.7 bits (71), Expect = 7.8
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = +3
Query: 36 RLITVKYLRXERYMQRFPNSPSIGPYLK 119
+L+TVKYLR +RY RFP + + LK
Sbjct: 869 KLVTVKYLRLDRYHHRFPQALTCNTPLK 896
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 523,283,893
Number of Sequences: 1657284
Number of extensions: 9004550
Number of successful extensions: 15947
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 15544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15944
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 48760335122
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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