Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0098
         (650 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL137533-1|CAB70796.1|  198|Homo sapiens hypothetical protein pr...    33   0.88 
AF263918-1|AAF73293.1|  910|Homo sapiens inner nuclear membrane ...    33   0.88 
AF112299-1|AAD31593.2|  911|Homo sapiens integral inner nuclear ...    33   0.88 

>AL137533-1|CAB70796.1|  198|Homo sapiens hypothetical protein
           protein.
          Length = 198

 Score = 33.1 bits (72), Expect = 0.88
 Identities = 15/30 (50%), Positives = 20/30 (66%)
 Frame = +3

Query: 36  RLITVKYLRXERYMQRFPNSPSIGPYLKMS 125
           +L+TVKYLR +RY  RFP + +    LK S
Sbjct: 146 KLVTVKYLRLDRYHHRFPQALTSNTPLKPS 175


>AF263918-1|AAF73293.1|  910|Homo sapiens inner nuclear membrane
           protein protein.
          Length = 910

 Score = 33.1 bits (72), Expect = 0.88
 Identities = 15/30 (50%), Positives = 20/30 (66%)
 Frame = +3

Query: 36  RLITVKYLRXERYMQRFPNSPSIGPYLKMS 125
           +L+TVKYLR +RY  RFP + +    LK S
Sbjct: 858 KLVTVKYLRLDRYHHRFPQALTSNTPLKPS 887


>AF112299-1|AAD31593.2|  911|Homo sapiens integral inner nuclear
           membrane protein MAN1 protein.
          Length = 911

 Score = 33.1 bits (72), Expect = 0.88
 Identities = 15/30 (50%), Positives = 20/30 (66%)
 Frame = +3

Query: 36  RLITVKYLRXERYMQRFPNSPSIGPYLKMS 125
           +L+TVKYLR +RY  RFP + +    LK S
Sbjct: 859 KLVTVKYLRLDRYHHRFPQALTSNTPLKPS 888


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,748,876
Number of Sequences: 237096
Number of extensions: 1303166
Number of successful extensions: 5404
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5393
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5404
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7253890590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)