Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0091
         (650 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_07_0061 + 12489552-12489674,12490761-12490836,12490916-124909...    29   2.4  
04_04_1488 - 33922253-33922361,33922459-33922649,33922752-339241...    29   3.2  
03_06_0387 + 33558592-33558840,33559171-33559262,33559349-335594...    28   7.4  

>10_07_0061 +
           12489552-12489674,12490761-12490836,12490916-12490980,
           12491089-12491166,12492156-12492236,12492813-12492974,
           12493328-12493426,12493509-12494797,12495063-12495286,
           12495373-12495500,12495596-12495634,12495724-12497178
          Length = 1272

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = -1

Query: 263 PNKLNLNINKVLQLTQKKEILCT--NVFHNKK 174
           P+KLNL I K  +L Q  E++ T  N+ H KK
Sbjct: 226 PHKLNLGIGKKRRLRQNPEVVVTSNNMSHGKK 257


>04_04_1488 -
           33922253-33922361,33922459-33922649,33922752-33924130,
           33924205-33924340,33924427-33924502,33924806-33924925,
           33925005-33925082,33925605-33925695,33925805-33925889,
           33925977-33926132,33926317-33926373,33926454-33926552,
           33926702-33926814,33926924-33927014
          Length = 926

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = +1

Query: 262 GNKLLLQEAAYSRVLSSLKKNYCK*LRTCTTFCHTRPVDL 381
           G+ L   +++YS ++ ++K+NY   L   T+ C T+   L
Sbjct: 417 GSPLSFHQSSYSSIIQNVKQNYIPPLTVSTSACLTKQESL 456


>03_06_0387 +
           33558592-33558840,33559171-33559262,33559349-33559406,
           33559515-33559580,33559666-33559788
          Length = 195

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -1

Query: 494 KKIITILVSIYTNETPLARWRYNYLA 417
           K + T+L  +Y    P  RW YN++A
Sbjct: 92  KAVKTVLTQLYEMNPPSYRWLYNFVA 117


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,136,772
Number of Sequences: 37544
Number of extensions: 216442
Number of successful extensions: 378
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 373
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 378
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)