Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0082
         (660 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23D3.04c |gpd2||glycerol-3-phosphate dehydrogenase Gpd2|Schi...    26   5.5  
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha...    25   7.3  
SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA reductase|Schi...    25   9.7  

>SPAC23D3.04c |gpd2||glycerol-3-phosphate dehydrogenase
           Gpd2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 373

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = -1

Query: 93  GSRCNYTEILELTSQGXXRXKXCRCP 16
           G  CN TE+   T +     K  +CP
Sbjct: 71  GKECNLTEVFNTTHENVKYLKGIKCP 96


>SPCC1235.05c |fft2||fun thirty related protein
           Fft2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1284

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +1

Query: 505 ELNLKKICIMCKYKMSLL*MWHYAPHLVTNVTKKFKRRLKSL 630
           E+ L K C +  +   LL   H+ PHLV   +   +  L+ L
Sbjct: 576 EMGLGKTCQVVAFFALLLEQGHHGPHLVVVPSSTLENWLREL 617


>SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA
           reductase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1053

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = +3

Query: 198 YCNF*NRRITFYR*VQLYNLVLFYVTYISTL 290
           YCNF  ++   +  V +Y+L+L +  +++ L
Sbjct: 333 YCNFGIKQFFLFAAVMIYDLLLLFSFFVAIL 363


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,515,641
Number of Sequences: 5004
Number of extensions: 49287
Number of successful extensions: 74
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)