Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0079
         (650 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    24   0.94 
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    24   0.94 
AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    23   2.2  
AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxida...    22   5.0  

>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 24.2 bits (50), Expect = 0.94
 Identities = 15/31 (48%), Positives = 17/31 (54%)
 Frame = -1

Query: 98  RLYTSLSPSSKSVAPRWCSAELKSSLTISRA 6
           R +  LSP   S APR  S E KSS + S A
Sbjct: 109 RPHPYLSPLFHSAAPRTASRETKSSESDSGA 139


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
          protein protein.
          Length = 585

 Score = 24.2 bits (50), Expect = 0.94
 Identities = 11/20 (55%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
 Frame = -3

Query: 63 SCT-PLVFSGVKIFTNDLSC 7
          +CT PL FSG+   TND  C
Sbjct: 8  TCTCPLGFSGINCQTNDEDC 27


>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -3

Query: 126 LIFHTIAFSEALYFA 82
           +IFH I F+  LYFA
Sbjct: 46  IIFHLILFAVLLYFA 60


>AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxidase
           subunit 2 protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = +2

Query: 356 PGAERRGDDWLRESQRVRIFE 418
           P  + RG+ WL   Q++   E
Sbjct: 506 PKTDERGNPWLFRDQKIMFIE 526


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,793
Number of Sequences: 336
Number of extensions: 1916
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16760905
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)