Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0079
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4 |Schizosac...    57   2e-09
SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1 |Schizosacc...    39   5e-04
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    28   1.3  
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar...    25   7.2  
SPBC543.02c |||DNAJ/TPR domain protein DNAJC7 family|Schizosacch...    25   9.5  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    25   9.5  

>SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 446

 Score = 57.2 bits (132), Expect = 2e-09
 Identities = 31/77 (40%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
 Frame = +2

Query: 26  KILTPLNTSGVQLICLKGKAKYKASENAIVWKIKRMAGMKETQLSAEIELLETDTKKKWT 205
           +I  P N         +GKA Y+ SEN I WKI R  G  E    AE+EL  T  ++ W 
Sbjct: 335 RIPVPTNVVKANPRVNRGKAGYEPSENIINWKIPRFLGETELIFYAEVELSNTTNQQIWA 394

Query: 206 RPPISMGFEV-PFAPSG 253
           +PPIS+ F +  F  SG
Sbjct: 395 KPPISLDFNILMFTSSG 411



 Score = 32.7 bits (71), Expect = 0.047
 Identities = 17/36 (47%), Positives = 23/36 (63%)
 Frame = +1

Query: 253 IKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGLYETR 360
           + V+YL+V EP  + S +  IKWVRY  R+G  E R
Sbjct: 412 LHVQYLRVSEP--SNSKYKSIKWVRYSTRAGTCEIR 445


>SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 39.1 bits (87), Expect = 5e-04
 Identities = 21/52 (40%), Positives = 28/52 (53%)
 Frame = +1

Query: 190 QEEVDAPAHLHGVRSSLCTLRIKVRYLKVFEPKLNYSDHDVIKWVRYIGRSG 345
           Q +   P  L        T  I+VRYLK+ EPKLNY     + WVRY+ ++G
Sbjct: 371 QVQKKRPVQLKFAIPYFTTSGIQVRYLKITEPKLNY---HAMPWVRYVTQNG 419


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3131

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -3

Query: 309 VMVRVIQLRFEHLQVANLDPEG 244
           + +R I +RFEHL V+N+ P G
Sbjct: 150 INIRDIHIRFEHLPVSNVVPGG 171


>SPAC57A7.04c |pabp||mRNA export shuttling protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 653

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = -2

Query: 301 PSNSASVRTPSGSEP*SGGC-KGNFEP 224
           P+N++SV TPSG+ P S     G  +P
Sbjct: 63  PTNASSVATPSGTAPTSASLYVGELDP 89


>SPBC543.02c |||DNAJ/TPR domain protein DNAJC7
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 476

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 41  LNTSGVQLICLKGKAKYKASENA 109
           LN   V+ + L+GK  Y + ENA
Sbjct: 172 LNPKNVEALVLRGKVMYYSGENA 194


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 17/43 (39%), Positives = 20/43 (46%)
 Frame = +2

Query: 68  CLKGKAKYKASENAIVWKIKRMAGMKETQLSAEIELLETDTKK 196
           C KG  +  + E AI WK+  MA  K    S   ELL   T K
Sbjct: 438 CQKGVEESASEEEAINWKL-LMAVSKRASRSKFAELLGYKTLK 479


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,070,343
Number of Sequences: 5004
Number of extensions: 33894
Number of successful extensions: 80
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)