Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0079
(650 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0373 + 28374298-28374380,28375126-28375303,28375975-283760... 77 2e-14
05_06_0262 - 26746180-26746278,26746371-26746493,26746584-267467... 40 0.002
01_06_0412 + 29159918-29160046,29160148-29160297,29160385-291604... 38 0.005
02_01_0068 + 488943-490457 29 4.2
06_01_0917 - 7077934-7080339 28 5.6
03_03_0193 - 15312568-15312753,15312811-15312933,15313112-153131... 28 5.6
02_05_0882 + 32477306-32478189,32478735-32478819,32478930-324789... 27 9.8
>02_05_0373 +
28374298-28374380,28375126-28375303,28375975-28376065,
28376162-28376256,28376379-28376468,28376789-28376837,
28376941-28377079,28377224-28377340,28377437-28377527,
28377604-28377746,28378009-28378123,28378439-28378483,
28378565-28378645
Length = 438
Score = 76.6 bits (180), Expect = 2e-14
Identities = 38/82 (46%), Positives = 50/82 (60%), Gaps = 2/82 (2%)
Frame = +2
Query: 20 LVKILTPLNTSGVQLICLKGKAKYKASENAIVWKIKRMAGMKETQLSAEIELLET-DTKK 196
+VK+ P T+ GKAKY AS +++VWKI++ G E +SAE+EL+ T KK
Sbjct: 326 VVKVPVPKQTAKTSFQTTSGKAKYNASIDSLVWKIRKFPGQTEATMSAEVELISTMGEKK 385
Query: 197 KWTRPPISMGFEVP-FAPSGSR 259
W RPPI M F+VP F SG R
Sbjct: 386 SWNRPPIQMEFQVPMFTASGLR 407
Score = 40.7 bits (91), Expect = 0.001
Identities = 18/37 (48%), Positives = 27/37 (72%)
Frame = +1
Query: 253 IKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGLYETRC 363
++VR+LKV+E S ++ ++WVRYI R+G YE RC
Sbjct: 406 LRVRFLKVWEK----SGYNTVEWVRYITRAGSYEIRC 438
>05_06_0262 -
26746180-26746278,26746371-26746493,26746584-26746725,
26746824-26746921,26747012-26747108,26747215-26747322,
26747900-26748003,26748170-26748268,26748373-26748435,
26748538-26748687,26748769-26748900
Length = 404
Score = 39.9 bits (89), Expect = 0.002
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Frame = +2
Query: 23 VKILTPLNTSGVQLICLKGKAKYKASENAIVWKIKRMAGMKETQLSAEIEL--LETDTKK 196
+++ P +++ + G A Y +A+VWKIK G KE AE L + ++
Sbjct: 291 IEVPVPEDSTNPNIRTSMGSAAYAPERDAMVWKIKSFPGGKEYMCRAEFSLPSITSEDGM 350
Query: 197 KWTRPPISMGFEVPF 241
+ PI + FE+P+
Sbjct: 351 PEKKAPIRVKFEIPY 365
Score = 33.9 bits (74), Expect = 0.11
Identities = 17/36 (47%), Positives = 22/36 (61%)
Frame = +1
Query: 253 IKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGLYETR 360
I+VRYLK+ E S + + WVRYI +G YE R
Sbjct: 371 IQVRYLKIIEK----SGYQALPWVRYITMAGEYELR 402
>01_06_0412 +
29159918-29160046,29160148-29160297,29160385-29160447,
29160540-29160716,29160796-29160899,29162142-29162249,
29162336-29162432,29162540-29162637,29162718-29162859,
29162941-29163063,29163161-29163259
Length = 429
Score = 38.3 bits (85), Expect = 0.005
Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Frame = +2
Query: 23 VKILTPLNTSGVQLICLKGKAKYKASENAIVWKIKRMAGMKETQLSAEIEL--LETDTKK 196
+++ P + + + G A Y +A+VWK+K G K+ AE L + +
Sbjct: 316 IEVPVPSDATNPNIRTSMGSAAYAPERDAMVWKVKSFPGGKDYMCRAEFSLPSITAEEAA 375
Query: 197 KWTRPPISMGFEVPF 241
+ PI + FE+P+
Sbjct: 376 PEKKAPIRVKFEIPY 390
Score = 33.9 bits (74), Expect = 0.11
Identities = 17/36 (47%), Positives = 22/36 (61%)
Frame = +1
Query: 253 IKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGLYETR 360
I+VRYLK+ E S + + WVRYI +G YE R
Sbjct: 396 IQVRYLKIIEK----SGYQALPWVRYITMAGEYELR 427
>02_01_0068 + 488943-490457
Length = 504
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +3
Query: 240 LHPPDQGSLPEGVRTEAELLG 302
LHPP Q LP GV+++AE+ G
Sbjct: 362 LHPPAQFLLPHGVQSDAEVGG 382
>06_01_0917 - 7077934-7080339
Length = 801
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -2
Query: 142 HARHALDLPHDSVLRGFILRFPLQANQL 59
H LP D++LRG + RFP +A L
Sbjct: 223 HPEEVAGLPVDAILRGSVRRFPDEAGAL 250
>03_03_0193 -
15312568-15312753,15312811-15312933,15313112-15313134,
15313196-15313349,15314443-15314754
Length = 265
Score = 28.3 bits (60), Expect = 5.6
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = -2
Query: 301 PSNSASVRTPSGSEP*SGGCKGNFEPHGDGRAR 203
P AS+ + S S P SGG G+F G GR R
Sbjct: 29 PRVFASISSSSSSSPFSGGGGGHFFGGGGGRGR 61
>02_05_0882 +
32477306-32478189,32478735-32478819,32478930-32478992,
32479177-32479334,32479460-32479535,32479622-32479681,
32479978-32480082,32480450-32480629
Length = 536
Score = 27.5 bits (58), Expect = 9.8
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = -1
Query: 374 RVVQHLVS*SPERPM*RTHLMTSWSE*FSFGSNTF 270
R ++HL+S SP R RT +TSW + GS +F
Sbjct: 254 RDIEHLISPSPHRRFRRT--ITSWLKGEHLGSGSF 286
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,786,377
Number of Sequences: 37544
Number of extensions: 251237
Number of successful extensions: 755
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 754
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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