Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0079
(650 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L26290-1|AAA27981.1| 441|Caenorhabditis elegans clathrin-associ... 133 1e-31
AF099001-8|AAP13778.1| 435|Caenorhabditis elegans Dumpy : short... 133 1e-31
AF099001-7|AAP13777.1| 441|Caenorhabditis elegans Dumpy : short... 133 1e-31
Z83115-4|CAB05557.3| 422|Caenorhabditis elegans Hypothetical pr... 48 8e-06
L26291-1|AAA72418.1| 422|Caenorhabditis elegans protein ( Caeno... 48 8e-06
AF003130-2|AAB54125.2| 426|Caenorhabditis elegans Adaptin, mu/m... 43 2e-04
Z83115-5|CAJ85757.1| 58|Caenorhabditis elegans Hypothetical pr... 35 0.044
Z81042-1|CAB02795.1| 1657|Caenorhabditis elegans Hypothetical pr... 31 0.54
Z93779-1|CAB07849.2| 2103|Caenorhabditis elegans Hypothetical pr... 29 2.2
Z78543-7|CAB01757.2| 2103|Caenorhabditis elegans Hypothetical pr... 29 2.2
Z66566-5|CAA91487.2| 2103|Caenorhabditis elegans Hypothetical pr... 29 2.2
AF101310-1|AAC69216.2| 765|Caenorhabditis elegans Hypothetical ... 29 2.2
AC006832-8|AAF40000.1| 465|Caenorhabditis elegans Hypothetical ... 28 6.6
Z93778-8|CAB07848.4| 437|Caenorhabditis elegans Hypothetical pr... 27 8.7
U95181-1|AAD00776.1| 437|Caenorhabditis elegans 2,5 dihydroxyph... 27 8.7
AL034364-5|CAA22255.4| 437|Caenorhabditis elegans Hypothetical ... 27 8.7
AF136150-1|AAF61419.1| 437|Caenorhabditis elegans homogentisate... 27 8.7
>L26290-1|AAA27981.1| 441|Caenorhabditis elegans
clathrin-associated protein homologueprotein.
Length = 441
Score = 133 bits (321), Expect = 1e-31
Identities = 63/79 (79%), Positives = 69/79 (87%), Gaps = 2/79 (2%)
Frame = +2
Query: 23 VKILTPLNTSGVQLICLKGKAKYKASENAIVWKIKRMAGMKETQLSAEIELLETDT--KK 196
V+I TP NTSGVQLIC+KGKAKYKA ENAIVWKIKRMAGMKE+Q+SAEI+LL T KK
Sbjct: 326 VRIPTPPNTSGVQLICMKGKAKYKAGENAIVWKIKRMAGMKESQISAEIDLLSTGNVEKK 385
Query: 197 KWTRPPISMGFEVPFAPSG 253
KW RPP+SM FEVPFAPSG
Sbjct: 386 KWNRPPVSMNFEVPFAPSG 404
Score = 84.6 bits (200), Expect = 5e-17
Identities = 36/37 (97%), Positives = 37/37 (100%)
Frame = +1
Query: 253 IKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGLYETRC 363
+KVRYLKVFEPKLNYSDHDVIKWVRYIGRSGLYETRC
Sbjct: 405 LKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGLYETRC 441
>AF099001-8|AAP13778.1| 435|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 23, isoform b protein.
Length = 435
Score = 133 bits (321), Expect = 1e-31
Identities = 63/79 (79%), Positives = 69/79 (87%), Gaps = 2/79 (2%)
Frame = +2
Query: 23 VKILTPLNTSGVQLICLKGKAKYKASENAIVWKIKRMAGMKETQLSAEIELLETDT--KK 196
V+I TP NTSGVQLIC+KGKAKYKA ENAIVWKIKRMAGMKE+Q+SAEI+LL T KK
Sbjct: 320 VRIPTPPNTSGVQLICMKGKAKYKAGENAIVWKIKRMAGMKESQISAEIDLLSTGNVEKK 379
Query: 197 KWTRPPISMGFEVPFAPSG 253
KW RPP+SM FEVPFAPSG
Sbjct: 380 KWNRPPVSMNFEVPFAPSG 398
Score = 84.6 bits (200), Expect = 5e-17
Identities = 36/37 (97%), Positives = 37/37 (100%)
Frame = +1
Query: 253 IKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGLYETRC 363
+KVRYLKVFEPKLNYSDHDVIKWVRYIGRSGLYETRC
Sbjct: 399 LKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGLYETRC 435
>AF099001-7|AAP13777.1| 441|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 23, isoform a protein.
Length = 441
Score = 133 bits (321), Expect = 1e-31
Identities = 63/79 (79%), Positives = 69/79 (87%), Gaps = 2/79 (2%)
Frame = +2
Query: 23 VKILTPLNTSGVQLICLKGKAKYKASENAIVWKIKRMAGMKETQLSAEIELLETDT--KK 196
V+I TP NTSGVQLIC+KGKAKYKA ENAIVWKIKRMAGMKE+Q+SAEI+LL T KK
Sbjct: 326 VRIPTPPNTSGVQLICMKGKAKYKAGENAIVWKIKRMAGMKESQISAEIDLLSTGNVEKK 385
Query: 197 KWTRPPISMGFEVPFAPSG 253
KW RPP+SM FEVPFAPSG
Sbjct: 386 KWNRPPVSMNFEVPFAPSG 404
Score = 84.6 bits (200), Expect = 5e-17
Identities = 36/37 (97%), Positives = 37/37 (100%)
Frame = +1
Query: 253 IKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGLYETRC 363
+KVRYLKVFEPKLNYSDHDVIKWVRYIGRSGLYETRC
Sbjct: 405 LKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGLYETRC 441
>Z83115-4|CAB05557.3| 422|Caenorhabditis elegans Hypothetical
protein K11D2.3a protein.
Length = 422
Score = 47.6 bits (108), Expect = 8e-06
Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = +2
Query: 77 GKAKYKASENAIVWKIKRMAGMKETQLSAEIELLETDTKKKWTRPPISMGFEVP-FAPSG 253
G KY ++A VW IK G KE L+A + L +++ RPPI + FE+P F SG
Sbjct: 329 GSVKYTPEQSAFVWTIKNFPGGKEYLLTAHLSLPSVMSEESEGRPPIKVKFEIPYFTTSG 388
Score = 35.1 bits (77), Expect = 0.044
Identities = 18/39 (46%), Positives = 24/39 (61%)
Frame = +1
Query: 244 TLRIKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGLYETR 360
T I+VRYLK+ E S + + WVRYI ++G YE R
Sbjct: 386 TSGIQVRYLKIIEK----SGYQALPWVRYITQNGEYEMR 420
>L26291-1|AAA72418.1| 422|Caenorhabditis elegans protein (
Caenorhabditis elegans(unc-101) mRNA, complete cds. ).
Length = 422
Score = 47.6 bits (108), Expect = 8e-06
Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = +2
Query: 77 GKAKYKASENAIVWKIKRMAGMKETQLSAEIELLETDTKKKWTRPPISMGFEVP-FAPSG 253
G KY ++A VW IK G KE L+A + L +++ RPPI + FE+P F SG
Sbjct: 329 GSVKYTPEQSAFVWTIKNFPGGKEYLLTAHLSLPSVMSEESEGRPPIKVKFEIPYFTTSG 388
Score = 34.3 bits (75), Expect = 0.076
Identities = 17/39 (43%), Positives = 24/39 (61%)
Frame = +1
Query: 244 TLRIKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGLYETR 360
T I+VRYLK+ E + + + WVRYI ++G YE R
Sbjct: 386 TSGIQVRYLKIIEKR----GYQALPWVRYITQNGEYEMR 420
>AF003130-2|AAB54125.2| 426|Caenorhabditis elegans Adaptin,
mu/medium chain (clathrinassociated complex) protein 1
protein.
Length = 426
Score = 43.2 bits (97), Expect = 2e-04
Identities = 24/73 (32%), Positives = 37/73 (50%)
Frame = +2
Query: 23 VKILTPLNTSGVQLICLKGKAKYKASENAIVWKIKRMAGMKETQLSAEIELLETDTKKKW 202
V I P + S + G AKY NAIVW I+ G +E + + L +++
Sbjct: 315 VIIPVPSDVSAPKFKTGAGTAKYVPELNAIVWSIRSFPGGREYIMRSSFMLPSIGSEELE 374
Query: 203 TRPPISMGFEVPF 241
RPPI++ FE+P+
Sbjct: 375 GRPPINVKFEIPY 387
Score = 32.3 bits (70), Expect = 0.31
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = +1
Query: 244 TLRIKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGLYETR 360
T ++VRYLK+ E S + + WVRY+ ++G Y+ R
Sbjct: 390 TSGLQVRYLKIIEK----SGYQALPWVRYVTQNGDYQMR 424
>Z83115-5|CAJ85757.1| 58|Caenorhabditis elegans Hypothetical
protein K11D2.3b protein.
Length = 58
Score = 35.1 bits (77), Expect = 0.044
Identities = 18/39 (46%), Positives = 24/39 (61%)
Frame = +1
Query: 244 TLRIKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGLYETR 360
T I+VRYLK+ E S + + WVRYI ++G YE R
Sbjct: 22 TSGIQVRYLKIIEK----SGYQALPWVRYITQNGEYEMR 56
>Z81042-1|CAB02795.1| 1657|Caenorhabditis elegans Hypothetical protein
C27H6.1 protein.
Length = 1657
Score = 31.5 bits (68), Expect = 0.54
Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 6/79 (7%)
Frame = +2
Query: 26 KILTPLNTSGVQLI-CLKGKAKYKASENAIVWKIKRM-----AGMKETQLSAEIELLETD 187
++L + S LI C G+AKY+ ++VW+I R+ A K L EL D
Sbjct: 1454 RLLGAVQASEPNLIECAIGEAKYEHVYRSLVWRIPRLPEKHHAAYKSHLLKCRFELSSFD 1513
Query: 188 TKKKWTRPPISMGFEVPFA 244
+ P + F +P A
Sbjct: 1514 LMPEEFLPRCDVDFTMPLA 1532
>Z93779-1|CAB07849.2| 2103|Caenorhabditis elegans Hypothetical protein
T25C12.3 protein.
Length = 2103
Score = 29.5 bits (63), Expect = 2.2
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = +1
Query: 259 VRYLKVFEPKLNYSDHDVIKWVRYIGRSGLYE 354
VR+L V+ + N +D D + +R I RSGLYE
Sbjct: 2019 VRHLLVYVTQTNPTDADPSELLRTIKRSGLYE 2050
>Z78543-7|CAB01757.2| 2103|Caenorhabditis elegans Hypothetical protein
T25C12.3 protein.
Length = 2103
Score = 29.5 bits (63), Expect = 2.2
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = +1
Query: 259 VRYLKVFEPKLNYSDHDVIKWVRYIGRSGLYE 354
VR+L V+ + N +D D + +R I RSGLYE
Sbjct: 2019 VRHLLVYVTQTNPTDADPSELLRTIKRSGLYE 2050
>Z66566-5|CAA91487.2| 2103|Caenorhabditis elegans Hypothetical protein
T25C12.3 protein.
Length = 2103
Score = 29.5 bits (63), Expect = 2.2
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = +1
Query: 259 VRYLKVFEPKLNYSDHDVIKWVRYIGRSGLYE 354
VR+L V+ + N +D D + +R I RSGLYE
Sbjct: 2019 VRHLLVYVTQTNPTDADPSELLRTIKRSGLYE 2050
>AF101310-1|AAC69216.2| 765|Caenorhabditis elegans Hypothetical
protein C39F7.2 protein.
Length = 765
Score = 29.5 bits (63), Expect = 2.2
Identities = 18/33 (54%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = +2
Query: 20 LVKILTPLNTSGVQLICLK-GKAKYKASENAIV 115
L ILTP +TSGVQL+C K Y EN+IV
Sbjct: 128 LHNILTP-STSGVQLVCNSCQKPSYFCDENSIV 159
>AC006832-8|AAF40000.1| 465|Caenorhabditis elegans Hypothetical
protein ZK355.6 protein.
Length = 465
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = +2
Query: 41 LNTSGVQLICL--KGKAKYKASENAIVWKIKRM 133
LN S ++ CL GK +A + VWK+K+M
Sbjct: 335 LNMSSLEPFCLFIYGKVVLEAGDEEFVWKLKKM 367
>Z93778-8|CAB07848.4| 437|Caenorhabditis elegans Hypothetical
protein W06D4.1 protein.
Length = 437
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = -3
Query: 297 VIQLRFEHLQVANLDPEGAKGTSNPMEMGGRVHFF 193
++++ H Q+ +L P GA G +NP + V +F
Sbjct: 203 ILEVYGTHFQLPDLGPIGANGLANPRDFEAPVAWF 237
>U95181-1|AAD00776.1| 437|Caenorhabditis elegans 2,5
dihydroxyphenylacetate oxidase protein.
Length = 437
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = -3
Query: 297 VIQLRFEHLQVANLDPEGAKGTSNPMEMGGRVHFF 193
++++ H Q+ +L P GA G +NP + V +F
Sbjct: 203 ILEVYGTHFQLPDLGPIGANGLANPRDFEAPVAWF 237
>AL034364-5|CAA22255.4| 437|Caenorhabditis elegans Hypothetical
protein W06D4.1 protein.
Length = 437
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = -3
Query: 297 VIQLRFEHLQVANLDPEGAKGTSNPMEMGGRVHFF 193
++++ H Q+ +L P GA G +NP + V +F
Sbjct: 203 ILEVYGTHFQLPDLGPIGANGLANPRDFEAPVAWF 237
>AF136150-1|AAF61419.1| 437|Caenorhabditis elegans homogentisate
1,2-dioxygenase protein.
Length = 437
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = -3
Query: 297 VIQLRFEHLQVANLDPEGAKGTSNPMEMGGRVHFF 193
++++ H Q+ +L P GA G +NP + V +F
Sbjct: 203 ILEVYGTHFQLPDLGPIGANGLANPRDFEAPVAWF 237
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,488,837
Number of Sequences: 27780
Number of extensions: 198199
Number of successful extensions: 533
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 530
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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