Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0073
(676 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1246 - 35226759-35226860,35227521-35227715,35227804-352283... 134 8e-32
06_01_0457 - 3263519-3263749,3264565-3265175,3265966-3266143 132 3e-31
01_03_0220 - 13905808-13905831,13906694-13906885,13906960-139075... 127 7e-30
03_02_0491 + 8854438-8854657,8854897-8854942,8855268-8855307,885... 97 1e-20
03_05_0488 - 24847076-24847220,24847823-24847872,24848139-248482... 64 1e-10
09_02_0241 + 6179869-6180116,6180406-6180436,6182038-6182190,618... 63 2e-10
10_07_0165 + 13740611-13740706,13741159-13741215,13741523-137416... 58 8e-09
05_02_0083 + 6450694-6450766,6451391-6451560,6451633-6451704,645... 58 8e-09
03_01_0473 - 3639533-3639598,3639848-3639955,3640037-3640126,364... 58 8e-09
01_06_0339 + 28549449-28549529,28549768-28549914,28550027-285500... 57 1e-08
03_06_0366 + 33408671-33408745,33409342-33409398,33410398-334104... 56 3e-08
02_02_0075 - 6572385-6572558,6573416-6573607,6574553-6574630,657... 54 1e-07
06_03_0542 + 21959533-21959785,21960732-21960846,21962815-219629... 53 2e-07
05_01_0319 + 2503963-2504176,2504316-2504376,2504691-2504769,250... 53 2e-07
08_02_0893 + 22327485-22327671,22327756-22328627 43 2e-04
07_01_0055 + 424097-427129 31 0.84
12_02_1128 - 26341118-26341204,26341302-26341441,26341567-263416... 30 1.5
07_03_0383 - 17476271-17479228,17480466-17480750 28 5.9
06_01_0817 - 6185881-6187074 28 7.8
03_05_0543 - 25404630-25405408,25405461-25405605 28 7.8
03_05_0390 - 23738892-23739392 28 7.8
>02_05_1246 -
35226759-35226860,35227521-35227715,35227804-35228363,
35229299-35229476
Length = 344
Score = 134 bits (323), Expect = 8e-32
Identities = 59/68 (86%), Positives = 64/68 (94%)
Frame = +3
Query: 48 KFLSKHEFDLICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGALMSVDETLMCSF 227
+FL KH+ DLICRAHQVVEDGYEFFA RQLVT+FSAPNYCGEFDNAGA+MSVD+TLMCSF
Sbjct: 231 EFLEKHDLDLICRAHQVVEDGYEFFANRQLVTIFSAPNYCGEFDNAGAMMSVDDTLMCSF 290
Query: 228 QILKPADK 251
QILKPA K
Sbjct: 291 QILKPARK 298
>06_01_0457 - 3263519-3263749,3264565-3265175,3265966-3266143
Length = 339
Score = 132 bits (318), Expect = 3e-31
Identities = 56/69 (81%), Positives = 65/69 (94%)
Frame = +3
Query: 48 KFLSKHEFDLICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGALMSVDETLMCSF 227
+FL H+ DLICRAHQVVEDGYEFFAKRQLVT+FSAPNYCGEFDNAGA+MS+D++L CSF
Sbjct: 248 EFLQTHDLDLICRAHQVVEDGYEFFAKRQLVTIFSAPNYCGEFDNAGAMMSIDDSLTCSF 307
Query: 228 QILKPADKR 254
QILKP+DK+
Sbjct: 308 QILKPSDKK 316
>01_03_0220 -
13905808-13905831,13906694-13906885,13906960-13907519,
13910007-13910187
Length = 318
Score = 127 bits (307), Expect = 7e-30
Identities = 55/67 (82%), Positives = 64/67 (95%)
Frame = +3
Query: 48 KFLSKHEFDLICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGALMSVDETLMCSF 227
+FL K++ DLICRAHQVVEDGYEFFA+R+LVT+FSAPNYCGEFDNAGAL+S+DE+LMCSF
Sbjct: 232 EFLEKNDLDLICRAHQVVEDGYEFFAQRRLVTIFSAPNYCGEFDNAGALLSIDESLMCSF 291
Query: 228 QILKPAD 248
QILKP D
Sbjct: 292 QILKPND 298
>03_02_0491 +
8854438-8854657,8854897-8854942,8855268-8855307,
8856025-8856090,8856237-8856318,8857036-8857595,
8857681-8857771,8858300-8858316
Length = 373
Score = 96.7 bits (230), Expect = 1e-20
Identities = 41/47 (87%), Positives = 44/47 (93%)
Frame = +3
Query: 48 KFLSKHEFDLICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAG 188
+FL KH+ DLICRAHQVVEDGYEFFA RQLVT+FSAPNYCGEFDNAG
Sbjct: 323 EFLEKHDLDLICRAHQVVEDGYEFFADRQLVTIFSAPNYCGEFDNAG 369
>03_05_0488 - 24847076-24847220,24847823-24847872,24848139-24848278,
24848358-24848493,24848584-24848683,24848837-24848949,
24849034-24849132,24849227-24849311,24849799-24850037,
24850202-24850372,24850544-24850784,24850899-24851172,
24851481-24851660,24852170-24852251,24852336-24852437,
24853315-24853384,24853725-24853824,24853931-24854025,
24854105-24854184,24854361-24854439,24854603-24854663,
24855570-24855984
Length = 1018
Score = 63.7 bits (148), Expect = 1e-10
Identities = 28/65 (43%), Positives = 44/65 (67%)
Frame = +3
Query: 48 KFLSKHEFDLICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGALMSVDETLMCSF 227
+F + ++ LI RAH+ V DG+E FA+ L+TLFSA NYCG +NAGA++ + L+
Sbjct: 868 EFCNNNDLQLIVRAHECVMDGFERFAQGHLITLFSATNYCGTANNAGAILVLGRDLVVVP 927
Query: 228 QILKP 242
+++ P
Sbjct: 928 KLIHP 932
>09_02_0241 +
6179869-6180116,6180406-6180436,6182038-6182190,
6182921-6182983,6183396-6183664,6184055-6184133,
6184213-6184263
Length = 297
Score = 63.3 bits (147), Expect = 2e-10
Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Frame = +3
Query: 12 RSASLLFXKSF-GKFLSKHEFDLICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAG 188
R A LF + F + D ICRAHQ+V +G+++ ++VT++SAPNYC N
Sbjct: 201 RGAGFLFGGNVVSSFNHTNNIDYICRAHQLVMEGFKWMFNNKIVTVWSAPNYCYRCGNVA 260
Query: 189 ALMSVDETLMCSFQILKPADKRS 257
A++ +DE L F++ + A S
Sbjct: 261 AILELDENLNKQFRVFEAAPHES 283
>10_07_0165 +
13740611-13740706,13741159-13741215,13741523-13741681,
13742315-13742398,13742496-13742567,13742810-13742881,
13743085-13743125,13743296-13743362,13744033-13744224,
13744314-13744403,13744742-13744849,13745089-13745154
Length = 367
Score = 57.6 bits (133), Expect = 8e-09
Identities = 28/82 (34%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Frame = +3
Query: 12 RSASLLFXKSFGK-FLSKHEFDLICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAG 188
R A F + + F + L+ RAHQ+V +GY + ++++VT+FSAPNYC N
Sbjct: 272 RGAGYTFGQDISEQFNHTNNLKLVARAHQLVMEGYNWAHEQKVVTIFSAPNYCYRCGNMA 331
Query: 189 ALMSVDETLMCSFQILKPADKR 254
+++ VD+ +F +PA +R
Sbjct: 332 SILEVDDCRNHTFIQFEPAPRR 353
>05_02_0083 +
6450694-6450766,6451391-6451560,6451633-6451704,
6451893-6452043,6452709-6452817,6452906-6453023,
6453214-6453361,6453520-6453768,6454209-6454334,
6454474-6454574,6454728-6454802,6455160-6455219
Length = 483
Score = 57.6 bits (133), Expect = 8e-09
Identities = 23/48 (47%), Positives = 34/48 (70%)
Frame = +3
Query: 48 KFLSKHEFDLICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGA 191
KFL ++ DL+ R+H+V ++GYE +L+T+FSAPNYC + N GA
Sbjct: 398 KFLQENNLDLVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGA 445
>03_01_0473 -
3639533-3639598,3639848-3639955,3640037-3640126,
3640203-3640394,3640952-3641018,3641472-3641512,
3641762-3641779,3641984-3642055,3642154-3642237,
3642296-3642373,3642703-3642759,3643374-3643469
Length = 322
Score = 57.6 bits (133), Expect = 8e-09
Identities = 28/82 (34%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Frame = +3
Query: 12 RSASLLFXKSFGK-FLSKHEFDLICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAG 188
R A F + + F + L+ RAHQ+V +GY + ++++VT+FSAPNYC N
Sbjct: 227 RGAGYTFGQDISEQFNHTNNLKLVARAHQLVMEGYNWAHEQKVVTIFSAPNYCYRCGNMA 286
Query: 189 ALMSVDETLMCSFQILKPADKR 254
+++ VD+ +F +PA +R
Sbjct: 287 SILEVDDCNSHTFIQFEPAPRR 308
>01_06_0339 +
28549449-28549529,28549768-28549914,28550027-28550094,
28550771-28550828,28551474-28551584,28551668-28551718,
28552308-28552451,28552570-28552665,28552781-28552852,
28553392-28553475
Length = 303
Score = 56.8 bits (131), Expect = 1e-08
Identities = 28/70 (40%), Positives = 43/70 (61%), Gaps = 2/70 (2%)
Frame = +3
Query: 12 RSASLLFXKSF-GKFLSKHEFDLICRAHQVVEDGYEF-FAKRQLVTLFSAPNYCGEFDNA 185
R A LF +F + DL+CRAHQ+V++G ++ F + LVT++SAPNYC N
Sbjct: 207 RGAGWLFGSRVTAEFNHINNLDLVCRAHQLVQEGLKYMFQDKGLVTVWSAPNYCYRCGNV 266
Query: 186 GALMSVDETL 215
+++S ET+
Sbjct: 267 ASILSFSETM 276
>03_06_0366 +
33408671-33408745,33409342-33409398,33410398-33410481,
33410575-33410646,33410768-33410839,33411011-33411051,
33411517-33411583,33411673-33411864,33411947-33412036,
33412111-33412218,33412513-33412578
Length = 307
Score = 56.0 bits (129), Expect = 3e-08
Identities = 28/82 (34%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Frame = +3
Query: 12 RSASLLFXKSFGK-FLSKHEFDLICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAG 188
R A F + + F + LI RAHQ+V +G+ + ++++VT+FSAPNYC N
Sbjct: 212 RGAGYTFGQDISEQFNHTNNLRLIARAHQLVMEGFNWAHEQKVVTIFSAPNYCYRCGNMA 271
Query: 189 ALMSVDETLMCSFQILKPADKR 254
+++ VD+ +F +PA +R
Sbjct: 272 SILEVDDCREHTFIQFEPAPRR 293
>02_02_0075 -
6572385-6572558,6573416-6573607,6574553-6574630,
6574712-6574820,6575442-6575556,6576280-6576535
Length = 307
Score = 53.6 bits (123), Expect = 1e-07
Identities = 27/82 (32%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Frame = +3
Query: 12 RSASLLFXKSFGK-FLSKHEFDLICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAG 188
R A F + + F + LI RAHQ+V +G+ + + +VT+FSAPNYC N
Sbjct: 212 RGAGYTFGQDIAQQFNHTNGLSLISRAHQLVMEGFNWCQDKNVVTVFSAPNYCYRCGNMA 271
Query: 189 ALMSVDETLMCSFQILKPADKR 254
A++ + E + +F PA ++
Sbjct: 272 AILEIGENMDQNFLQFDPAPRQ 293
>06_03_0542 +
21959533-21959785,21960732-21960846,21962815-21962923,
21963027-21963104,21964200-21964391,21964995-21965168
Length = 306
Score = 53.2 bits (122), Expect = 2e-07
Identities = 27/82 (32%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Frame = +3
Query: 12 RSASLLFXKSFGK-FLSKHEFDLICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAG 188
R A F + + F + LI RAHQ+V +G+ + + +VT+FSAPNYC N
Sbjct: 211 RGAGYTFGQDIAQQFNHTNGLTLISRAHQLVMEGFNWCQDKNVVTVFSAPNYCYRCGNMA 270
Query: 189 ALMSVDETLMCSFQILKPADKR 254
A++ + E + +F PA ++
Sbjct: 271 AILEIGENMDQNFLQFDPAPRQ 292
>05_01_0319 +
2503963-2504176,2504316-2504376,2504691-2504769,
2504861-2504940,2505046-2505140,2505748-2505847,
2506647-2506716,2507657-2507758,2507972-2508053,
2508257-2508304,2508841-2509009,2509089-2509314,
2509961-2510131,2510200-2510438,2510600-2510684,
2510778-2510876,2510954-2511153,2511232-2511307,
2511463-2511675,2511763-2511815,2511999-2512151,
2512474-2512606
Length = 915
Score = 53.2 bits (122), Expect = 2e-07
Identities = 23/41 (56%), Positives = 29/41 (70%)
Frame = +3
Query: 48 KFLSKHEFDLICRAHQVVEDGYEFFAKRQLVTLFSAPNYCG 170
+F ++ LI RAH+ V DG+E FA QL+TLFSA NYCG
Sbjct: 738 EFCKRNRLQLIIRAHECVMDGFERFAHGQLITLFSATNYCG 778
>08_02_0893 + 22327485-22327671,22327756-22328627
Length = 352
Score = 43.2 bits (97), Expect = 2e-04
Identities = 28/63 (44%), Positives = 36/63 (57%)
Frame = +2
Query: 95 GRRGWIRVLCEEATRHTLLGTKLLRGV**CRRPDVRGRDADVLVPDPEAGRQAQLYSGLN 274
G G +RVL +A +LG +LLR V RR D RGR +LVPDP+A Q Q+ G+
Sbjct: 286 GGGGRLRVLRGQAAGDHILGAELLRRVQQRRRADERGRQPALLVPDPQA-VQRQVAGGVT 344
Query: 275 MGR 283
R
Sbjct: 345 TKR 347
Score = 33.1 bits (72), Expect = 0.21
Identities = 12/16 (75%), Positives = 15/16 (93%)
Frame = +3
Query: 48 KFLSKHEFDLICRAHQ 95
+FL+KH+ DLICRAHQ
Sbjct: 234 EFLNKHDLDLICRAHQ 249
>07_01_0055 + 424097-427129
Length = 1010
Score = 31.1 bits (67), Expect = 0.84
Identities = 29/84 (34%), Positives = 35/84 (41%), Gaps = 6/84 (7%)
Frame = -3
Query: 431 KDSLKHQPVQGILSVQR*GRGVHACVGGRRACGAINSSCSWAVRAAAC------WGGPC* 270
+D L + G LS G G+ A G C +C A R A GP
Sbjct: 34 EDLLALRAFAGNLSAGGGGAGLRAAWSGDACCAWDGVACDAAARVTALRLPGRGLEGPI- 92
Query: 269 GPSTAALVGRLQDLERAHQRLVHG 198
PS AAL RLQDL+ +H L G
Sbjct: 93 PPSLAALA-RLQDLDLSHNALTGG 115
>12_02_1128 -
26341118-26341204,26341302-26341441,26341567-26341663,
26341755-26341830,26341919-26342118,26342199-26342297,
26342395-26342479,26342786-26343024,26343233-26343403,
26343605-26343848,26343980-26344253,26344755-26344934,
26345342-26345423,26346209-26346278,26346802-26346901,
26347003-26347097,26347181-26347317,26347342-26347420,
26347591-26347651,26348580-26349009
Length = 981
Score = 30.3 bits (65), Expect = 1.5
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +3
Query: 48 KFLSKHEFDLICRAHQVVEDGYEFFAK 128
+F + ++ LI RAH+ V DG+E FA+
Sbjct: 880 EFCNNNDLQLIVRAHECVMDGFERFAQ 906
>07_03_0383 - 17476271-17479228,17480466-17480750
Length = 1080
Score = 28.3 bits (60), Expect = 5.9
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +2
Query: 626 CIQGFRKSESGSQNRC 673
C+QGF S SG+QN+C
Sbjct: 646 CLQGFLVSPSGTQNKC 661
>06_01_0817 - 6185881-6187074
Length = 397
Score = 27.9 bits (59), Expect = 7.8
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = -1
Query: 238 FRIWNEHISVSSTDIRAP--ALSNSPQ*FGAEKSVTSCL 128
FR+W+E +S S+ + AP A + SP GAE + L
Sbjct: 178 FRLWHEKLSDSANQLIAPIMATAGSPDLAGAEAELAPYL 216
>03_05_0543 - 25404630-25405408,25405461-25405605
Length = 307
Score = 27.9 bits (59), Expect = 7.8
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = +1
Query: 280 PPQHAAARTAQEQEELMAPHAR 345
PP AAA A+E+EE MA AR
Sbjct: 214 PPPAAAAAAAEEEEERMAREAR 235
>03_05_0390 - 23738892-23739392
Length = 166
Score = 27.9 bits (59), Expect = 7.8
Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Frame = +2
Query: 200 RGRDADVLVPDPE-AGRQAQLYSGLN 274
RGRD D L+P PE AGR +++ ++
Sbjct: 141 RGRDKDYLLPTPERAGRDIYMHANID 166
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,176,512
Number of Sequences: 37544
Number of extensions: 432891
Number of successful extensions: 1409
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1340
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1407
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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