Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0073
(676 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB167961-1|BAD51404.1| 554|Apis mellifera E74 protein. 27 0.12
AY569719-1|AAS86672.1| 401|Apis mellifera feminizer protein. 25 0.50
AY569718-1|AAS86671.1| 401|Apis mellifera feminizer protein. 25 0.50
AY569715-1|AAS86668.1| 401|Apis mellifera feminizer protein. 25 0.50
AY569714-1|AAS86667.1| 401|Apis mellifera feminizer protein. 25 0.50
AY569711-1|AAS86664.1| 401|Apis mellifera feminizer protein. 25 0.50
AY569702-1|AAS86655.1| 400|Apis mellifera feminizer protein. 25 0.50
AY350616-1|AAQ57658.1| 401|Apis mellifera complementary sex det... 25 0.50
AY569713-1|AAS86666.1| 401|Apis mellifera feminizer protein. 24 1.2
DQ667188-1|ABG75740.1| 383|Apis mellifera histamine-gated chlor... 24 1.5
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr... 23 2.7
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso... 22 6.1
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 22 6.1
AB086196-1|BAD06465.1| 289|Apis mellifera Period protein. 22 6.1
AB181702-1|BAE06051.1| 628|Apis mellifera acetylcholinesterase ... 21 8.1
>AB167961-1|BAD51404.1| 554|Apis mellifera E74 protein.
Length = 554
Score = 27.5 bits (58), Expect = 0.12
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +1
Query: 262 LGPQHGPPQHAAARTAQEQEELMAPHARRPPT 357
+GP GPP H Q + L H R+PPT
Sbjct: 343 MGPTMGPPHHHHHHQTQSLQHL---HYRQPPT 371
>AY569719-1|AAS86672.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 25.4 bits (53), Expect = 0.50
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Frame = +1
Query: 523 AINSKKKRRAEIASKRYPVTERHLNNGSCSFQ--LKMHSRVSEER 651
A+N +K K+Y ++ L + S SFQ HSR + R
Sbjct: 194 AVNIEKSENETKTCKKYAISSNSLRSRSRSFQRTSSCHSRYEDSR 238
>AY569718-1|AAS86671.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 25.4 bits (53), Expect = 0.50
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Frame = +1
Query: 523 AINSKKKRRAEIASKRYPVTERHLNNGSCSFQ--LKMHSRVSEER 651
A+N +K K+Y ++ L + S SFQ HSR + R
Sbjct: 194 AVNIEKSENETKTCKKYAISSNSLRSRSRSFQRTSSCHSRYEDSR 238
>AY569715-1|AAS86668.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 25.4 bits (53), Expect = 0.50
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Frame = +1
Query: 523 AINSKKKRRAEIASKRYPVTERHLNNGSCSFQ--LKMHSRVSEER 651
A+N +K K+Y ++ L + S SFQ HSR + R
Sbjct: 194 AVNIEKSENETKTCKKYAISSNSLRSRSRSFQRTSSCHSRYEDSR 238
>AY569714-1|AAS86667.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 25.4 bits (53), Expect = 0.50
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Frame = +1
Query: 523 AINSKKKRRAEIASKRYPVTERHLNNGSCSFQ--LKMHSRVSEER 651
A+N +K K+Y ++ L + S SFQ HSR + R
Sbjct: 194 AVNIEKSENETKTCKKYAISSNSLGSRSRSFQRTSSCHSRYEDSR 238
>AY569711-1|AAS86664.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 25.4 bits (53), Expect = 0.50
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Frame = +1
Query: 523 AINSKKKRRAEIASKRYPVTERHLNNGSCSFQ--LKMHSRVSEER 651
A+N +K K+Y ++ L + S SFQ HSR + R
Sbjct: 194 AVNIEKSENETKTCKKYAISSNSLRSRSRSFQRTSSCHSRYEDSR 238
>AY569702-1|AAS86655.1| 400|Apis mellifera feminizer protein.
Length = 400
Score = 25.4 bits (53), Expect = 0.50
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Frame = +1
Query: 523 AINSKKKRRAEIASKRYPVTERHLNNGSCSFQ--LKMHSRVSEER 651
A+N +K K+Y ++ L + S SFQ HSR + R
Sbjct: 194 AVNIEKSENETKTCKKYAISSNSLRSRSRSFQRTSSCHSRYEDSR 238
>AY350616-1|AAQ57658.1| 401|Apis mellifera complementary sex
determiner protein.
Length = 401
Score = 25.4 bits (53), Expect = 0.50
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Frame = +1
Query: 523 AINSKKKRRAEIASKRYPVTERHLNNGSCSFQ--LKMHSRVSEER 651
A+N +K K+Y ++ L + S SFQ HSR + R
Sbjct: 194 AVNIEKSENETKTCKKYAISSNSLRSRSRSFQRTSSCHSRYEDSR 238
>AY569713-1|AAS86666.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 24.2 bits (50), Expect = 1.2
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Frame = +1
Query: 523 AINSKKKRRAEIASKRYPVTERHLNNGSCSFQ--LKMHSRVSEER 651
A+N +K K+Y ++ L + S SFQ HSR + R
Sbjct: 194 AVNIEKSENETKTCKKYAISSNSLRSRSRSFQRTSSCHSRYEDLR 238
>DQ667188-1|ABG75740.1| 383|Apis mellifera histamine-gated chloride
channel protein.
Length = 383
Score = 23.8 bits (49), Expect = 1.5
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -1
Query: 142 VTSCLFAKNSYPSSTTWCARQIKSNSCLDKNL 47
V SC SYP T C+ I+S S ++L
Sbjct: 129 VLSCAMKFESYPHDTQICSMMIESLSHTTQDL 160
>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
protein.
Length = 1370
Score = 23.0 bits (47), Expect = 2.7
Identities = 7/27 (25%), Positives = 15/27 (55%)
Frame = +1
Query: 271 QHGPPQHAAARTAQEQEELMAPHARRP 351
QH PP ++ + Q++ + P + +P
Sbjct: 1266 QHAPPAYSCGTVSVPQQQQLPPSSPQP 1292
>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
protein.
Length = 1770
Score = 21.8 bits (44), Expect = 6.1
Identities = 9/33 (27%), Positives = 15/33 (45%)
Frame = +3
Query: 180 NAGALMSVDETLMCSFQILKPADKRSCTRASTW 278
N + ++ + S LKP DK + +TW
Sbjct: 462 NRKQISELESNMQISPNELKPNDKSQVIKQNTW 494
>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
protein.
Length = 1124
Score = 21.8 bits (44), Expect = 6.1
Identities = 12/70 (17%), Positives = 31/70 (44%)
Frame = -1
Query: 223 EHISVSSTDIRAPALSNSPQ*FGAEKSVTSCLFAKNSYPSSTTWCARQIKSNSCLDKNLP 44
E IS + + SN+ +++S S + ++ S+ +C R+ + ++ LP
Sbjct: 3 EEISTENAKVSDSGYSNTCSNSQSQRSSGSSISRNSNRSESSGYCGRRPSTFGSSNEALP 62
Query: 43 KDFXNKSEAD 14
+ + + +
Sbjct: 63 QPISKRKDKE 72
>AB086196-1|BAD06465.1| 289|Apis mellifera Period protein.
Length = 289
Score = 21.8 bits (44), Expect = 6.1
Identities = 12/70 (17%), Positives = 31/70 (44%)
Frame = -1
Query: 223 EHISVSSTDIRAPALSNSPQ*FGAEKSVTSCLFAKNSYPSSTTWCARQIKSNSCLDKNLP 44
E IS + + SN+ +++S S + ++ S+ +C R+ + ++ LP
Sbjct: 3 EEISTENAKVSDSGYSNTCSNSQSQRSSGSSISRNSNRSESSGYCGRRPSTFGSSNEALP 62
Query: 43 KDFXNKSEAD 14
+ + + +
Sbjct: 63 QPISKRKDKE 72
>AB181702-1|BAE06051.1| 628|Apis mellifera acetylcholinesterase
protein.
Length = 628
Score = 21.4 bits (43), Expect = 8.1
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -3
Query: 80 DQVELVFGQELAKRLR 33
D+VE VFG L K L+
Sbjct: 498 DEVEYVFGHPLNKSLK 513
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,656
Number of Sequences: 438
Number of extensions: 4070
Number of successful extensions: 19
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20464920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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