Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0067
         (661 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC694.04c |||conserved eukaryotic protein|Schizosaccharomyces ...    83   3e-17
SPBC6B1.12c |sus1||SAGA complex subunit Sus1 |Schizosaccharomyce...    27   1.8  
SPBC1703.08c |||5-formyltetrahydrofolate cyclo-ligase|Schizosacc...    27   1.8  
SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter Trk2|Sch...    27   2.4  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    27   3.2  
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom...    26   4.2  
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces...    26   4.2  
SPBC13G1.02 |||mannose-1-phosphate guanyltransferase |Schizosacc...    26   5.5  

>SPAC694.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 324

 Score = 83.4 bits (197), Expect = 3e-17
 Identities = 37/73 (50%), Positives = 50/73 (68%)
 Frame = +3

Query: 273 MKIGTHDGVFHCDEVLACFMLKNLPQYKDAEIIRTRDLNKLNDCDIVVDVGSVFDHEKKR 452
           +KI TH G FH DE LA +ML+ L ++  A+I+R+RD   L+ CDI+VDVG  +D   K 
Sbjct: 5   VKIATHSGTFHADEALAVYMLRRLDRFSGAQIVRSRDPQVLDSCDIIVDVGGKYD-GIKY 63

Query: 453 YDHHQAGFNETLS 491
           +DHHQ  FN+T S
Sbjct: 64  FDHHQREFNDTFS 76



 Score = 47.2 bits (107), Expect = 2e-06
 Identities = 18/48 (37%), Positives = 34/48 (70%)
 Frame = +2

Query: 518 YKIKLSSAGLVYAYYGEDIIQQLKEESTSLTNEDLKLIYKKVYESFIQ 661
           Y  +LSSAGL+Y ++G ++I  +  +   +  +DL+ +Y+KVY+SF++
Sbjct: 79  YSTRLSSAGLIYKHFGREVIHAVLPQ-LKINEQDLETLYEKVYQSFVE 125


>SPBC6B1.12c |sus1||SAGA complex subunit Sus1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 108

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = +2

Query: 581 QLKEESTSLTNEDLKLIYKKVYESFIQ 661
           QL++ +  + N D K+ ++K+YES +Q
Sbjct: 44  QLRDYTRGIVNSDSKIDFQKLYESALQ 70


>SPBC1703.08c |||5-formyltetrahydrofolate
           cyclo-ligase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 204

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 11/53 (20%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = +3

Query: 399 DCDIVVDVGSVFDHEKKRYDHHQAGFNETLSTLRP-ELETAIKLNLVQQALCM 554
           DC++++  G  FD +  R  H +  ++  +S  +   L+   + N+ +  +C+
Sbjct: 120 DCELIIVPGVAFDEKLSRLGHGKGYYDNYISKYQSWALQKESRANMFKVGICL 172


>SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter
           Trk2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 880

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 429 VFDHEKKRYDHHQAGFNETLSTLRPELETA 518
           V DHE +   +H    N ++S+  P LETA
Sbjct: 278 VHDHENQTQLNHHLDNNSSISSHNPSLETA 307


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
            Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 442  SWSKTLPTSTTISQSFSLFRSLV 374
            SW+ T P+      SF LFRSL+
Sbjct: 1578 SWATTCPSRRLACNSFQLFRSLL 1600


>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1125

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 19/67 (28%), Positives = 34/67 (50%)
 Frame = -2

Query: 465 GDDHNASFHGQKHFLHQQLYHSHSAYLDLLCG*SQHLCIEEDSLA*SKLELHRSGILRRE 286
           G    A+ + QK+   QQL   + +  +LL   ++ LC++ D L  S  E   S IL  +
Sbjct: 664 GTLEEATSYYQKNTELQQLLKQNESASELLKSRNEKLCVDYDKLR-SVFEEDSSKILSLQ 722

Query: 285 SQSSSLK 265
            ++ +L+
Sbjct: 723 KENENLQ 729


>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
 Frame = +3

Query: 336 KNLPQYKDAEIIRTRDLNKLNDC-DIVVDVGSVF---DHEKKRYDHHQAGFNE 482
           KNL    D  +I TR +N   +   IV DV  +    DH++  YD H++ F +
Sbjct: 115 KNLASEMD--VINTRIVNPTGELLKIVKDVDKLLLKRDHKQLDYDRHRSSFKK 165


>SPBC13G1.02 |||mannose-1-phosphate guanyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 414

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
 Frame = +3

Query: 384 LNKLNDCDIVVDVGSVFDHEKKRYDHHQAGFNETLSTLRPELETAIKLNL-VQQALC 551
           L+ +  C I +   S+FD  KK Y+       + L +L   +E  + L   V   LC
Sbjct: 177 LSNIISCGIYIFDASIFDEIKKAYERRLEEVEKQLRSLDEGMEDYLSLETDVLAPLC 233


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,422,397
Number of Sequences: 5004
Number of extensions: 46243
Number of successful extensions: 133
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)