Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0067
(661 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0345 - 28142434-28142658,28143087-28143158,28143252-281433... 91 9e-19
02_02_0707 + 13144147-13144788,13145115-13148663 29 2.5
02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,162... 29 3.3
10_08_0444 + 17971724-17971797,17972119-17972176,17972613-179727... 29 4.3
02_02_0672 - 12814610-12815703,12815743-12816226 29 4.3
07_03_1591 + 27967065-27967090,27967236-27968054,27984940-279850... 28 5.7
>02_05_0345 -
28142434-28142658,28143087-28143158,28143252-28143371,
28143483-28143674,28144919-28145017,28145448-28145594,
28146310-28146513
Length = 352
Score = 90.6 bits (215), Expect = 9e-19
Identities = 35/69 (50%), Positives = 50/69 (72%)
Frame = +3
Query: 276 KIGTHDGVFHCDEVLACFMLKNLPQYKDAEIIRTRDLNKLNDCDIVVDVGSVFDHEKKRY 455
++GTH+G FHCDE L C++++ Q+ A+++RTRD L+ D V+DVG V+D + RY
Sbjct: 31 RVGTHNGSFHCDEALGCYLIRLTSQFAGADVVRTRDPQILDTLDAVLDVGGVYDPSRHRY 90
Query: 456 DHHQAGFNE 482
DHHQ GFNE
Sbjct: 91 DHHQKGFNE 99
Score = 46.4 bits (105), Expect = 2e-05
Identities = 22/51 (43%), Positives = 34/51 (66%)
Frame = +2
Query: 509 GDSYKIKLSSAGLVYAYYGEDIIQQLKEESTSLTNEDLKLIYKKVYESFIQ 661
G + KLSSAGLVY ++G++II KE S +ED+ +Y +Y+SF++
Sbjct: 102 GHGFNTKLSSAGLVYKHFGKEII--AKELEVSEDHEDVHRLYLAIYKSFVE 150
>02_02_0707 + 13144147-13144788,13145115-13148663
Length = 1396
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/46 (26%), Positives = 26/46 (56%)
Frame = +1
Query: 118 TLNNEFYNLIKYNVTYRNITYVMLNRILPRTCSLLNSASYNFRHYC 255
TLNN ++ + + +IT+++ + ++P C+L+ A + H C
Sbjct: 992 TLNNRDRIVLLWQGVFEHITHIVQSTVMP--CNLVEKAVFGLLHIC 1035
>02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,
1625603-1625887,1626016-1626030,1626339-1626419,
1626909-1627322,1627423-1627719,1627801-1629864
Length = 3057
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +3
Query: 390 KLNDCDIVVDVGSVFDHEKKRYDHHQAGFNETLSTLRPELETAIKL 527
K + D + +VG+ HE + H A +TLS + P+ A KL
Sbjct: 2668 KASQEDALEEVGTELPHESLHENRHGAKDEQTLSLIEPDTGNAEKL 2713
>10_08_0444 +
17971724-17971797,17972119-17972176,17972613-17972708,
17972974-17973000,17973019-17973075,17973604-17973687,
17974304-17974384,17974928-17975071,17975218-17975309,
17975998-17976079,17976818-17977000,17977360-17977438,
17977555-17977613,17978162-17978290,17979188-17979367,
17980312-17980446,17980528-17980602,17980890-17980947,
17981035-17981282,17981594-17981733,17981961-17982132,
17982797-17982887,17983099-17983221,17984951-17985032,
17985715-17985835,17985886-17985915,17986427-17986549
Length = 940
Score = 28.7 bits (61), Expect = 4.3
Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = +3
Query: 297 VFHCDEVLACF-MLKNLPQYKDAEIIRTRDLNKLNDCDIVVDVGSVFDHEKKRYDHHQAG 473
+ H + V +C +L + K A + D N+L++C ++ GS + Y HQ
Sbjct: 597 LMHNEVVTSCSNLLAGMEILKAAMVQLLNDYNRLSECVKIIPGGSTLNRNLPYYGVHQVH 656
Query: 474 F 476
F
Sbjct: 657 F 657
>02_02_0672 - 12814610-12815703,12815743-12816226
Length = 525
Score = 28.7 bits (61), Expect = 4.3
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Frame = +3
Query: 309 DEVLACFMLKNLPQYKDAEIIRTRDLNKLNDCDIVVDVGSVFDHEKKRYDHHQAGFNETL 488
D ACF LK+L +++ T LN+L D + ++ +FD + DHH F+ T+
Sbjct: 442 DAATACF-LKSLTSGLSMDVL-TVLLNRLVYADKIWEINRIFDGKDFVPDHHV--FDLTI 497
Query: 489 STL----RPELETAIKLNLVQQAL 548
T T KLNL+ A+
Sbjct: 498 RTFCRVGYCHYRTFYKLNLILDAM 521
>07_03_1591 +
27967065-27967090,27967236-27968054,27984940-27985022,
27985590-27985744,27985956-27986461,27986551-27986703,
27987146-27987485,27987558-27987822,27987897-27988634,
27989734-27989779,27989849-27990223,27991511-27991567,
27991640-27992438
Length = 1453
Score = 28.3 bits (60), Expect = 5.7
Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
Frame = +3
Query: 282 GTHDGVFHCDEVLACFMLKNLPQYKDAEIIRTRDLNKLNDCDIVVDVGSVFDHEKKRYDH 461
G+H+GV V AC M N P+ KD R +KL + ++V VG VFD ++ YD
Sbjct: 334 GSHEGVDRPPCVQACEM--NTPE-KDRVY---RHDSKLRE-EMVPKVGMVFDSYEEAYDF 386
Query: 462 HQ-----AGFNETLSTLRP 503
++ AGF+ S +P
Sbjct: 387 YERYSYHAGFDIKKSRNKP 405
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,145,293
Number of Sequences: 37544
Number of extensions: 246089
Number of successful extensions: 514
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 513
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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