Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0067
         (661 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28983| Best HMM Match : No HMM Matches (HMM E-Value=.)             109   2e-24
SB_33178| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.48 
SB_11107| Best HMM Match : Plasmodium_HRP (HMM E-Value=10)             29   4.4  
SB_46345| Best HMM Match : AAA_5 (HMM E-Value=0.053)                   28   7.7  

>SB_28983| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 951

 Score =  109 bits (262), Expect = 2e-24
 Identities = 47/74 (63%), Positives = 54/74 (72%)
 Frame = +3

Query: 276 KIGTHDGVFHCDEVLACFMLKNLPQYKDAEIIRTRDLNKLNDCDIVVDVGSVFDHEKKRY 455
           KIGTH+G FHCDEVLAC+MLK LP+Y  A+IIRTRD   L  CD+VVDV  V+D  K RY
Sbjct: 12  KIGTHNGTFHCDEVLACYMLKQLPEYSHADIIRTRDPKILEQCDVVVDVSGVYDASKHRY 71

Query: 456 DHHQAGFNETLSTL 497
           DHHQ  F   + TL
Sbjct: 72  DHHQRSFTGCMQTL 85



 Score = 41.1 bits (92), Expect = 8e-04
 Identities = 19/48 (39%), Positives = 31/48 (64%)
 Frame = +2

Query: 518 YKIKLSSAGLVYAYYGEDIIQQLKEESTSLTNEDLKLIYKKVYESFIQ 661
           +K KLSSAGLVY ++G  ++ Q+ +      ++ L  +Y K+YE+ IQ
Sbjct: 92  WKTKLSSAGLVYLHFGRRVLSQVMQMPED--HQALDKVYDKIYENLIQ 137


>SB_33178| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 120

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 17/43 (39%), Positives = 27/43 (62%)
 Frame = -2

Query: 516 LSPVQASRYSRSH*NRLGDDHNASFHGQKHFLHQQLYHSHSAY 388
           L+  QA++ SR H   + +D  ++FHGQK   H+ L HS +A+
Sbjct: 68  LTRPQATQ-SRQHMGAIDEDSTSAFHGQK---HETLVHSKAAF 106


>SB_11107| Best HMM Match : Plasmodium_HRP (HMM E-Value=10)
          Length = 296

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
 Frame = +1

Query: 67  IPN*IYHNR*HSTVCVETLNNEF-YNLIKYNVTYRNITYVMLNRILPRTC---SLLNSAS 234
           +PN   HN  HST    +LNN   +N +     + ++T    +  LP T    SL N+  
Sbjct: 198 LPNTTRHNSLHSTTRHNSLNNTTRHNSLTNTTRHNSLTNTTRHNSLPNTARHNSLTNTTR 257

Query: 235 YN 240
           +N
Sbjct: 258 HN 259


>SB_46345| Best HMM Match : AAA_5 (HMM E-Value=0.053)
          Length = 636

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = -3

Query: 482 LIKTGLVMIITLLFMVKNTSYINNYITVI 396
           +I T ++MIIT+   + + + INN+I +I
Sbjct: 92  IIITIIIMIITITITINHITIINNHINII 120


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,162,024
Number of Sequences: 59808
Number of extensions: 313537
Number of successful extensions: 734
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 733
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)