Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0067
         (661 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          23   2.6  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      23   2.6  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   7.9  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   7.9  

>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 10/42 (23%), Positives = 21/42 (50%)
 Frame = +1

Query: 127 NEFYNLIKYNVTYRNITYVMLNRILPRTCSLLNSASYNFRHY 252
           NEF  L+K+ +  R   + M+N+ +     +L    Y+ + +
Sbjct: 78  NEFMQLLKHGMLPRGQVFTMMNKEMRHQAVVLFRLLYSAKTF 119


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 10/42 (23%), Positives = 21/42 (50%)
 Frame = +1

Query: 127 NEFYNLIKYNVTYRNITYVMLNRILPRTCSLLNSASYNFRHY 252
           NEF  L+K+ +  R   + M+N+ +     +L    Y+ + +
Sbjct: 78  NEFMQLLKHGMLPRGQVFTMMNKEMRHQAVVLFRLLYSAKTF 119


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/19 (36%), Positives = 9/19 (47%)
 Frame = -2

Query: 450  ASFHGQKHFLHQQLYHSHS 394
            A  H     LH  +YH H+
Sbjct: 1728 AGLHPNNTLLHSFMYHEHA 1746


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/19 (36%), Positives = 9/19 (47%)
 Frame = -2

Query: 450  ASFHGQKHFLHQQLYHSHS 394
            A  H     LH  +YH H+
Sbjct: 1724 AGLHPNNTLLHSFMYHEHA 1742


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,136
Number of Sequences: 438
Number of extensions: 3307
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19855845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)