Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0067
         (661 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g49320.1 68416.m05392 expressed protein contains Pfam profile...    94   6e-20
At5g41970.1 68418.m05110 expressed protein contains Pfam profile...    91   6e-19
At4g21070.1 68417.m03047 BRCT domain-containing protein / zinc f...    30   1.6  
At1g80680.1 68414.m09467 nucleoporin family protein contains Pfa...    28   6.3  
At1g32770.1 68414.m04040 no apical meristem (NAM) family protein...    27   8.4  
At1g02205.2 68414.m00154 CER1 protein identical to maize gl1 hom...    27   8.4  
At1g02205.1 68414.m00153 CER1 protein identical to maize gl1 hom...    27   8.4  

>At3g49320.1 68416.m05392 expressed protein contains Pfam profile
           PF03690: Uncharacterised protein family (UPF0160)
          Length = 354

 Score = 94.3 bits (224), Expect = 6e-20
 Identities = 37/69 (53%), Positives = 51/69 (73%)
 Frame = +3

Query: 276 KIGTHDGVFHCDEVLACFMLKNLPQYKDAEIIRTRDLNKLNDCDIVVDVGSVFDHEKKRY 455
           ++GTH+G FHCDE LACF+L+   ++ DA+I+RTRD   L   D  +DVG V+D + +RY
Sbjct: 33  RVGTHNGTFHCDEALACFILRRSNRFSDAQIVRTRDHQVLEKLDAALDVGGVYDPQSERY 92

Query: 456 DHHQAGFNE 482
           DHHQ GF+E
Sbjct: 93  DHHQKGFSE 101



 Score = 38.7 bits (86), Expect = 0.003
 Identities = 21/51 (41%), Positives = 31/51 (60%)
 Frame = +2

Query: 509 GDSYKIKLSSAGLVYAYYGEDIIQQLKEESTSLTNEDLKLIYKKVYESFIQ 661
           G  +  KLSSAGLVY +YG +II   KE      + D+  ++  VY++FI+
Sbjct: 104 GLGFNTKLSSAGLVYKHYGLEIIS--KELQLEQRHPDVFRLFLAVYKNFIE 152


>At5g41970.1 68418.m05110 expressed protein contains Pfam profile
           PF03690: Uncharacterised protein family (UPF0160)
          Length = 346

 Score = 91.1 bits (216), Expect = 6e-19
 Identities = 37/69 (53%), Positives = 50/69 (72%)
 Frame = +3

Query: 276 KIGTHDGVFHCDEVLACFMLKNLPQYKDAEIIRTRDLNKLNDCDIVVDVGSVFDHEKKRY 455
           K+GTH+G FHCDE L CFM++ + ++  A+I+R+RD   L + D V+DVG V+D E  RY
Sbjct: 25  KVGTHNGSFHCDEALGCFMIRLVDKFSGADIVRSRDPKILAELDAVLDVGGVYDPEHDRY 84

Query: 456 DHHQAGFNE 482
           DHHQ GF E
Sbjct: 85  DHHQKGFEE 93



 Score = 40.7 bits (91), Expect = 8e-04
 Identities = 20/51 (39%), Positives = 33/51 (64%)
 Frame = +2

Query: 509 GDSYKIKLSSAGLVYAYYGEDIIQQLKEESTSLTNEDLKLIYKKVYESFIQ 661
           G  +  KLSSAGLVY ++G++II   KE +    + D+  ++  VY+SF++
Sbjct: 96  GHGFNTKLSSAGLVYKHFGKEII--AKELNVEQDHPDVLRLFLAVYKSFME 144


>At4g21070.1 68417.m03047 BRCT domain-containing protein / zinc
           finger (C3HC4-type RING finger) family protein (BRCA1)
           contains Pfam profiles PF00533: BRCA1 C Terminus (BRCT)
           domain, PF00097: Zinc finger, C3HC4 type (RING finger),
           PF01535: PPR repeat; identical to cDNA BRCA1 GI:28372473
          Length = 1276

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 21/89 (23%), Positives = 43/89 (48%), Gaps = 3/89 (3%)
 Frame = +3

Query: 297 VFHCDEVLACFMLKNLPQYKDAEIIRTRDLNKLNDCDIVVD-VGSVFDHEKKRYDHHQAG 473
           V+H +++   FML + P+     ++  ++L    DC + +  V  V++ E    D  ++ 
Sbjct: 278 VYHSEKIAIAFMLISTPERSPITVV--KNLRVCADCHLAIKLVSKVYNREIVVRDRSRSK 335

Query: 474 FNET--LSTLRPELETAIKLNLVQQALCM 554
             +T  L  +  EL+  I L+L   A+ +
Sbjct: 336 MADTSHLERMGRELKCPICLSLYNSAVSL 364


>At1g80680.1 68414.m09467 nucleoporin family protein contains Pfam
           profile: PF04096 nucleoporin autopeptidase
          Length = 1046

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +2

Query: 566 EDIIQQLKEESTSLTNEDLKLIYKKVYESFIQ 661
           ED++Q +KE+S  +  E L LI +  +  ++Q
Sbjct: 527 EDVMQDVKEDSAKIDTEALPLIRRAEFSCWLQ 558


>At1g32770.1 68414.m04040 no apical meristem (NAM) family protein
           similar to OsNAC7 protein GB:BAA89801 GI:6730944 from
           [Oryza sativa]
          Length = 358

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 10/59 (16%)
 Frame = +3

Query: 309 DEVLACFMLKNLPQYK-DAEIIRTRDLNKLNDCDIVVD--VGSV-------FDHEKKRY 455
           +E+L  ++ K +   K D ++IR  DLNKL   DI  +  +GS        F H+ K+Y
Sbjct: 27  EELLHYYLRKKVNSQKIDLDVIREVDLNKLEPWDIQEECRIGSTPQNDWYFFSHKDKKY 85


>At1g02205.2 68414.m00154 CER1 protein identical to maize gl1
           homolog (glossy1 locus) GI:1209703 and CER1 GI:1199467
           from [Arabidopsis thaliana]
          Length = 625

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 11/52 (21%), Positives = 26/52 (50%)
 Frame = +1

Query: 82  YHNR*HSTVCVETLNNEFYNLIKYNVTYRNITYVMLNRILPRTCSLLNSASY 237
           YH+  HS++  E + +  +   ++   +      +L  +L +T S+++ A Y
Sbjct: 158 YHSHHHSSIVTEPITSVIHPFAEHIAYFILFAIPLLTTLLTKTASIISFAGY 209


>At1g02205.1 68414.m00153 CER1 protein identical to maize gl1
           homolog (glossy1 locus) GI:1209703 and CER1 GI:1199467
           from [Arabidopsis thaliana]
          Length = 580

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 11/52 (21%), Positives = 26/52 (50%)
 Frame = +1

Query: 82  YHNR*HSTVCVETLNNEFYNLIKYNVTYRNITYVMLNRILPRTCSLLNSASY 237
           YH+  HS++  E + +  +   ++   +      +L  +L +T S+++ A Y
Sbjct: 158 YHSHHHSSIVTEPITSVIHPFAEHIAYFILFAIPLLTTLLTKTASIISFAGY 209


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,111,223
Number of Sequences: 28952
Number of extensions: 221455
Number of successful extensions: 591
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 591
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1383534864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)