Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0060
(650 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_UPI0000EB3A94 Cluster: UPI0000EB3A94 related cluster; n... 36 0.64
UniRef50_UPI00005A03C4 Cluster: PREDICTED: similar to F-box prot... 36 0.84
UniRef50_Q3SX24 Cluster: F-box protein 6; n=4; Amniota|Rep: F-bo... 35 1.5
UniRef50_Q9UJT9 Cluster: F-box/LRR-repeat protein 7; n=23; Eutel... 35 1.5
UniRef50_Q6DJL2 Cluster: LOC443723 protein; n=3; Xenopus|Rep: LO... 35 1.9
UniRef50_A5B543 Cluster: Putative uncharacterized protein; n=2; ... 35 1.9
UniRef50_UPI0000DA1BAE Cluster: PREDICTED: similar to dynein, ax... 34 2.6
UniRef50_Q9NRD1 Cluster: F-box only protein 6; n=34; Tetrapoda|R... 34 2.6
UniRef50_UPI000047095F Cluster: F-box only protein 44 (F-box pro... 34 3.4
UniRef50_Q8NIV8 Cluster: Putative uncharacterized protein B13H18... 34 3.4
UniRef50_UPI00006A11DF Cluster: F-box only protein 2.; n=3; Xeno... 33 4.5
UniRef50_A2A7H6 Cluster: F-box protein 44; n=3; Euarchontoglires... 33 4.5
UniRef50_Q8TD57 Cluster: Ciliary dynein heavy chain 3; n=43; Euk... 33 5.9
UniRef50_UPI0000499DD2 Cluster: leucine rich repeat protein; n=1... 33 7.8
UniRef50_O44580 Cluster: Putative uncharacterized protein; n=1; ... 33 7.8
UniRef50_A3FQ42 Cluster: Putative uncharacterized protein; n=3; ... 33 7.8
>UniRef50_UPI0000EB3A94 Cluster: UPI0000EB3A94 related cluster; n=1;
Canis lupus familiaris|Rep: UPI0000EB3A94 UniRef100
entry - Canis familiaris
Length = 246
Score = 36.3 bits (80), Expect = 0.64
Identities = 17/42 (40%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Frame = +3
Query: 24 LSXIFTFLPAKQLT-KCREVCIRWKNVIDTLNKYHSLWYKFC 146
L +FT +PA+QL +CR VC W+++ID + +LW + C
Sbjct: 8 LLEVFTHIPARQLLLRCRPVCSLWRDLIDLV----TLWKRKC 45
>UniRef50_UPI00005A03C4 Cluster: PREDICTED: similar to F-box protein
44 isoform 1; n=1; Canis lupus familiaris|Rep:
PREDICTED: similar to F-box protein 44 isoform 1 - Canis
familiaris
Length = 186
Score = 35.9 bits (79), Expect = 0.84
Identities = 17/42 (40%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Frame = +3
Query: 24 LSXIFTFLPAKQLT-KCREVCIRWKNVIDTLNKYHSLWYKFC 146
L +FT +PA+QL +CR VC W+++ID + +LW + C
Sbjct: 14 LLELFTHIPARQLLLRCRPVCSLWRDLIDLV----TLWKRKC 51
>UniRef50_Q3SX24 Cluster: F-box protein 6; n=4; Amniota|Rep: F-box
protein 6 - Bos taurus (Bovine)
Length = 265
Score = 35.1 bits (77), Expect = 1.5
Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Frame = +3
Query: 24 LSXIFTFLPAKQLTK-CREVCIRWKNVIDTLNKYHSLWYKFC 146
L +F +PA+QL + CR VC W+++ID + SLW + C
Sbjct: 14 LLEVFMHVPARQLLRNCRPVCCLWRDLIDLV----SLWKRKC 51
>UniRef50_Q9UJT9 Cluster: F-box/LRR-repeat protein 7; n=23;
Euteleostomi|Rep: F-box/LRR-repeat protein 7 - Homo
sapiens (Human)
Length = 491
Score = 35.1 bits (77), Expect = 1.5
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +3
Query: 33 IFTFLPAKQLTKCREVCIRWKNV 101
IF+FLP QL +C VC RW N+
Sbjct: 125 IFSFLPTNQLCRCARVCRRWYNL 147
>UniRef50_Q6DJL2 Cluster: LOC443723 protein; n=3; Xenopus|Rep:
LOC443723 protein - Xenopus laevis (African clawed frog)
Length = 290
Score = 34.7 bits (76), Expect = 1.9
Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Frame = +3
Query: 24 LSXIFTFLPAKQLTK-CREVCIRWKNVIDTLNKYHSLWYKFCGKDFKNVYKFAHRLSRPQ 200
L I +F+P+ L K CR V RW ++DT +LW C + ++ F LS P
Sbjct: 26 LLVILSFVPSLDLLKSCRLVSKRWLRLVDT----PTLWKIKCQQKWRKEV-FNSALSIPN 80
Query: 201 ITWHELYRSLTLWRQL 248
+ W ++ R L
Sbjct: 81 VNWQRIFMKEPFLRNL 96
>UniRef50_A5B543 Cluster: Putative uncharacterized protein; n=2;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 862
Score = 34.7 bits (76), Expect = 1.9
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = +3
Query: 33 IFTFLPAKQLTKCREVCIRWKNVI 104
I T++P K L +CR VC RW+++I
Sbjct: 489 ILTYIPVKSLLQCRGVCKRWRSMI 512
>UniRef50_UPI0000DA1BAE Cluster: PREDICTED: similar to dynein,
axonemal, heavy polypeptide 3; n=1; Rattus
norvegicus|Rep: PREDICTED: similar to dynein, axonemal,
heavy polypeptide 3 - Rattus norvegicus
Length = 752
Score = 34.3 bits (75), Expect = 2.6
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +3
Query: 174 FAHRLSRPQITWHELYRSLTLWRQLHL 254
F HR+ R + WH +Y+S+ W + HL
Sbjct: 192 FPHRVIRAPVPWHNIYQSVKKWNEEHL 218
>UniRef50_Q9NRD1 Cluster: F-box only protein 6; n=34; Tetrapoda|Rep:
F-box only protein 6 - Homo sapiens (Human)
Length = 293
Score = 34.3 bits (75), Expect = 2.6
Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Frame = +3
Query: 24 LSXIFTFLPAKQLT-KCREVCIRWKNVIDTLNKYHSLWYKFC 146
L +FT +PA+QL CR VC W+++ID + +LW + C
Sbjct: 21 LLELFTHVPARQLLLNCRLVCSLWRDLIDLM----TLWKRKC 58
>UniRef50_UPI000047095F Cluster: F-box only protein 44 (F-box
protein FBX30) (F-box/G-domain protein 3).; n=3;
Eutheria|Rep: F-box only protein 44 (F-box protein
FBX30) (F-box/G-domain protein 3). - Homo sapiens
Length = 256
Score = 33.9 bits (74), Expect = 3.4
Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Frame = +3
Query: 24 LSXIFTFLPAKQLT-KCREVCIRWKNVIDTLNKYHSLWYKFC 146
L +FT +PA+QL CR VC W+++ID + +LW + C
Sbjct: 14 LLELFTHVPARQLLLNCRLVCSLWRDLIDLV----TLWKRKC 51
>UniRef50_Q8NIV8 Cluster: Putative uncharacterized protein
B13H18.010; n=1; Neurospora crassa|Rep: Putative
uncharacterized protein B13H18.010 - Neurospora crassa
Length = 1150
Score = 33.9 bits (74), Expect = 3.4
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +3
Query: 207 WHELYRSL-TLWRQLHLLDSTTTNSRQQPRWPAKSRASDIYETERPASTLK 356
WH+ L T+WR HL++STT + RQ+ K A + E E+P LK
Sbjct: 662 WHKKPHVLSTIWRYAHLVNSTTFHMRQKGTILLKMDAGKLKE-EKPLKRLK 711
>UniRef50_UPI00006A11DF Cluster: F-box only protein 2.; n=3; Xenopus
tropicalis|Rep: F-box only protein 2. - Xenopus
tropicalis
Length = 257
Score = 33.5 bits (73), Expect = 4.5
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Frame = +3
Query: 24 LSXIFTFLPAKQLTK-CREVCIRWKNVIDTLNKYHSLWYKFC 146
L I + +PA++L CR VC +WKN+ID L+ + + + C
Sbjct: 20 LIRILSEIPAEELVLVCRLVCSQWKNIIDGLDFWQTKCMQDC 61
>UniRef50_A2A7H6 Cluster: F-box protein 44; n=3;
Euarchontoglires|Rep: F-box protein 44 - Mus musculus
(Mouse)
Length = 224
Score = 33.5 bits (73), Expect = 4.5
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Frame = +3
Query: 24 LSXIFTFLPAKQLT-KCREVCIRWKNVIDTLNKYHSLWYKFC 146
L +F +PA+QL +CR VC W+++ID + +LW + C
Sbjct: 14 LLELFIHIPARQLLLRCRPVCSLWRDLIDLV----TLWKRKC 51
>UniRef50_Q8TD57 Cluster: Ciliary dynein heavy chain 3; n=43;
Eukaryota|Rep: Ciliary dynein heavy chain 3 - Homo
sapiens (Human)
Length = 4116
Score = 33.1 bits (72), Expect = 5.9
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = +3
Query: 174 FAHRLSRPQITWHELYRSLTLWRQLHLLDSTTTNSRQQPRWPAKSR 311
F R+ R + WH +YRS W + HL R + W A+ R
Sbjct: 318 FPQRVIRAPVPWHSVYRSAKKWNEEHLHTVNPMMLRLKELWFAEFR 363
>UniRef50_UPI0000499DD2 Cluster: leucine rich repeat protein; n=1;
Entamoeba histolytica HM-1:IMSS|Rep: leucine rich repeat
protein - Entamoeba histolytica HM-1:IMSS
Length = 657
Score = 32.7 bits (71), Expect = 7.8
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +3
Query: 33 IFTFLPAKQLTKCREVCIRWKNVIDTL 113
+F +L K L KCR VC WK+ + TL
Sbjct: 49 VFGYLSQKDLMKCRLVCKTWKDYLKTL 75
>UniRef50_O44580 Cluster: Putative uncharacterized protein; n=1;
Caenorhabditis elegans|Rep: Putative uncharacterized
protein - Caenorhabditis elegans
Length = 352
Score = 32.7 bits (71), Expect = 7.8
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = -2
Query: 157 KSFPQNLYHNEWYLLRVSMTFFQRMQTSRHFVNCFAGRKVKXNDN 23
K FP + HN W L+ + +FF + T + FA R K ++N
Sbjct: 28 KFFPTSRCHNVWNLIFIHSSFFNKYSTMEFLI--FAARSYKEHEN 70
>UniRef50_A3FQ42 Cluster: Putative uncharacterized protein; n=3;
Cryptosporidium|Rep: Putative uncharacterized protein -
Cryptosporidium parvum Iowa II
Length = 394
Score = 32.7 bits (71), Expect = 7.8
Identities = 25/98 (25%), Positives = 42/98 (42%), Gaps = 1/98 (1%)
Frame = +2
Query: 212 RALQVSDSVEATAPPRQHYDE-FASATTVASEIQGFRYLRNGTAGVHTKAGVVYYDLDTL 388
+ + D E + HYDE F T + RYL+ G+ + GV D+
Sbjct: 202 KEIAAGDDEEVLEGLQAHYDESFVKGTLILPN--RLRYLQKRKVGIKLQGGVSSLDIARE 259
Query: 389 QRSKRAVIYGDYNRYVETDDTVLLMNSNLHLFITRKLI 502
+ + G N YV + +T + +S LH I ++L+
Sbjct: 260 FIKQVEDVLG--NEYVSSPNTFRIGSSTLHPLIIQELL 295
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 619,265,709
Number of Sequences: 1657284
Number of extensions: 12217652
Number of successful extensions: 35167
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 33995
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35162
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 48760335122
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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