Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0060
(650 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0514 - 4270936-4272084 33 0.26
11_01_0524 - 4115125-4115491,4116096-4116180,4116796-4116938,411... 31 0.80
04_03_0704 + 18872899-18874191 31 1.1
01_01_0711 + 5506632-5507328,5507410-5507485,5507544-5508234 31 1.1
12_01_0181 + 1341829-1343022 30 1.4
11_01_0181 + 1435031-1436224 30 1.4
01_06_0138 + 26865895-26865953,26866628-26867870 30 1.4
04_01_0484 - 6352556-6352881,6352927-6353692 29 2.4
08_02_1104 + 24339463-24340314,24340472-24340786 29 3.2
02_01_0243 - 1601977-1602834,1602857-1603063 29 3.2
09_04_0747 + 19892090-19893304,19893471-19893602,19894168-198942... 29 4.2
02_01_0253 + 1664217-1664378,1664739-1664999,1665116-1665622,166... 29 4.2
10_07_0062 - 12499872-12501350 28 5.6
03_05_1063 + 30048724-30048753,30049036-30049175,30049282-300493... 28 5.6
09_03_0103 - 12383585-12384700 28 7.4
04_04_0446 - 25288154-25288863,25288949-25289135,25289331-25291061 28 7.4
03_03_0067 + 14230211-14231506 28 7.4
04_01_0488 - 6419731-6420843 27 9.8
04_01_0477 - 6221990-6223224,6227722-6228817 27 9.8
03_05_0832 - 28037047-28037315,28037428-28037530,28037664-280376... 27 9.8
>05_01_0514 - 4270936-4272084
Length = 382
Score = 32.7 bits (71), Expect = 0.26
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +3
Query: 33 IFTFLPAKQLTKCREVCIRWKNVI 104
I + LPAK + +CR VC RW+ +I
Sbjct: 29 ILSRLPAKSVRRCRRVCRRWRRLI 52
>11_01_0524 -
4115125-4115491,4116096-4116180,4116796-4116938,
4117449-4117654,4118650-4118748,4118958-4118993,
4119222-4119276,4119505-4119690,4120572-4120759
Length = 454
Score = 31.1 bits (67), Expect = 0.80
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +3
Query: 60 LTKCREVCIRWKNVIDTLNKYHSLWYK 140
L +C VC W VIDT + L+YK
Sbjct: 53 LARCSTVCNSWNRVIDTAHLMRDLYYK 79
>04_03_0704 + 18872899-18874191
Length = 430
Score = 30.7 bits (66), Expect = 1.1
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +3
Query: 24 LSXIFTFLPAKQLTKCREVCIRWKNVID 107
+S I LP K LT+C+ VC W+ ++
Sbjct: 37 VSEILARLPVKTLTRCKSVCRSWRAALE 64
>01_01_0711 + 5506632-5507328,5507410-5507485,5507544-5508234
Length = 487
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +3
Query: 261 STTTNSRQQPRWPAKSRASDIYETERPASTLKPAWCI 371
+T+T ++Q PRWP+ S A+ A+ L+ W +
Sbjct: 31 ATSTPTKQSPRWPSPSAAASSVLPSGAAALLESRWAL 67
>12_01_0181 + 1341829-1343022
Length = 397
Score = 30.3 bits (65), Expect = 1.4
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 24 LSXIFTFLPAKQLTKCREVCIRWKNV 101
+S I LP K + +CR VC W++V
Sbjct: 26 MSEILLLLPPKSILQCRAVCKAWRDV 51
>11_01_0181 + 1435031-1436224
Length = 397
Score = 30.3 bits (65), Expect = 1.4
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +3
Query: 24 LSXIFTFLPAKQLTKCREVCIRWKNV 101
LS I LP K + +CR VC W++V
Sbjct: 26 LSEILLLLPPKSILQCRAVCKVWRDV 51
>01_06_0138 + 26865895-26865953,26866628-26867870
Length = 433
Score = 30.3 bits (65), Expect = 1.4
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +3
Query: 24 LSXIFTFLPAKQLTKCREVCIRWKNVI 104
L IFTFLP + + VC RW ++I
Sbjct: 79 LERIFTFLPIVSMIRSTAVCKRWHDII 105
>04_01_0484 - 6352556-6352881,6352927-6353692
Length = 363
Score = 29.5 bits (63), Expect = 2.4
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 33 IFTFLPAKQLTKCREVCIRWKNVIDT 110
I LP K L +CR+VC W+ + T
Sbjct: 25 ILVRLPPKPLLRCRQVCRAWRRLTST 50
>08_02_1104 + 24339463-24340314,24340472-24340786
Length = 388
Score = 29.1 bits (62), Expect = 3.2
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +3
Query: 15 TXXLSXIFTFLPAKQLTKCREVCIRWKNVID 107
T L I + LP CR VC RW++ ID
Sbjct: 19 TDVLVDILSQLPTSSRRLCRLVCRRWRDTID 49
>02_01_0243 - 1601977-1602834,1602857-1603063
Length = 354
Score = 29.1 bits (62), Expect = 3.2
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +3
Query: 45 LPAKQLTKCREVCIRWKNVIDT 110
LPAK + +CR VC W+ + T
Sbjct: 13 LPAKAVLRCRAVCRSWRRITTT 34
>09_04_0747 +
19892090-19893304,19893471-19893602,19894168-19894215,
19894697-19894766,19894936-19894963,19896021-19896519
Length = 663
Score = 28.7 bits (61), Expect = 4.2
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +3
Query: 24 LSXIFTFLPAKQLTKCREVCIRWKNVI 104
+ +F LP K L C VC +W+++I
Sbjct: 26 IEQVFLSLPVKTLLNCIGVCKQWRSII 52
>02_01_0253 +
1664217-1664378,1664739-1664999,1665116-1665622,
1665746-1665802
Length = 328
Score = 28.7 bits (61), Expect = 4.2
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +3
Query: 24 LSXIFTFLPAKQLTKCREVCIRWKNV 101
++ I LPAK + +CR VC W+ +
Sbjct: 76 VAEILLRLPAKSVLRCRAVCRSWRRI 101
>10_07_0062 - 12499872-12501350
Length = 492
Score = 28.3 bits (60), Expect = 5.6
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +3
Query: 24 LSXIFTFLPAKQLTKCREVCIRWKNV 101
L I LPA+ + +CR VC W+ +
Sbjct: 151 LCEILVRLPARSVLRCRAVCTAWRRL 176
>03_05_1063 +
30048724-30048753,30049036-30049175,30049282-30049336,
30049419-30049526,30050190-30050288,30050380-30050457,
30050558-30050635,30051875-30051949,30052117-30052217,
30052502-30052527,30053224-30053297,30053358-30053379,
30054108-30054223,30054361-30054618,30054716-30054832,
30055649-30055699,30055859-30056086,30056550-30056648,
30056823-30056999,30057298-30057417
Length = 683
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = +2
Query: 347 HTKAGVVYYDLDTLQRSKRAVIYGDYNRYVETDDTVLLMNSNL 475
H K +LDT + ++Y +YN+++ DT+ M +N+
Sbjct: 23 HVKMAAEIKNLDT---DLQMLVYENYNKFISATDTIKRMKTNI 62
>09_03_0103 - 12383585-12384700
Length = 371
Score = 27.9 bits (59), Expect = 7.4
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +3
Query: 24 LSXIFTFLPAKQLTKCREVCIRW 92
L+ +F LPA+ L CR VC W
Sbjct: 22 LTEVFHRLPARTLASCRLVCKSW 44
>04_04_0446 - 25288154-25288863,25288949-25289135,25289331-25291061
Length = 875
Score = 27.9 bits (59), Expect = 7.4
Identities = 17/47 (36%), Positives = 23/47 (48%)
Frame = +2
Query: 152 GL*KRLQIRSPALPSSDHLARALQVSDSVEATAPPRQHYDEFASATT 292
GL L + PAL SS R D++ AT P+Q ++ S TT
Sbjct: 22 GLDDDLPAKEPALQSSRRNLRRSHSLDNLAATNRPQQQQEQHYSRTT 68
>03_03_0067 + 14230211-14231506
Length = 431
Score = 27.9 bits (59), Expect = 7.4
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +3
Query: 24 LSXIFTFLPAKQLTKCREVCIRWKN 98
L I LPA+ + +CR VC W++
Sbjct: 12 LDEILLRLPARSILRCRAVCKAWRS 36
>04_01_0488 - 6419731-6420843
Length = 370
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +3
Query: 33 IFTFLPAKQLTKCREVCIRWKNVIDT 110
I LP K L +CR VC W+ + T
Sbjct: 23 ILVRLPPKPLLRCRLVCRAWRRLTST 48
>04_01_0477 - 6221990-6223224,6227722-6228817
Length = 776
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +3
Query: 33 IFTFLPAKQLTKCREVCIRWKNVIDT 110
I LP K L +CR VC W+ + T
Sbjct: 27 ILVRLPPKPLLRCRLVCRAWRRLTST 52
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +3
Query: 33 IFTFLPAKQLTKCREVCIRWKNVIDT 110
I LP K L +CR VC W+ + T
Sbjct: 418 ILVRLPPKPLLRCRLVCRAWRRLTST 443
>03_05_0832 -
28037047-28037315,28037428-28037530,28037664-28037695,
28037788-28038005,28038145-28038260,28038514-28038757,
28039129-28039216,28039513-28039588,28040126-28040164,
28040347-28040405,28041292-28041529
Length = 493
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 338 AGVHTKAGVVYYDLDTLQRSKRAVIY 415
+G +K G+VY D +TL+R +A Y
Sbjct: 460 SGYTSKFGIVYVDFNTLERHPKASAY 485
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,647,494
Number of Sequences: 37544
Number of extensions: 336345
Number of successful extensions: 999
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 969
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 999
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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