Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0060
         (650 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23713| Best HMM Match : Disintegrin (HMM E-Value=6.6e-05)           31   0.81 
SB_6560| Best HMM Match : F-box (HMM E-Value=2e-10)                    31   0.81 
SB_22037| Best HMM Match : Xan_ur_permease (HMM E-Value=2e-07)         31   0.81 
SB_10275| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_43342| Best HMM Match : F-box (HMM E-Value=4.1e-09)                 25   2.4  
SB_26957| Best HMM Match : PDZ (HMM E-Value=0)                         29   3.3  
SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0)              29   4.3  
SB_55795| Best HMM Match : 7tm_1 (HMM E-Value=3.9e-08)                 29   4.3  
SB_38076| Best HMM Match : 7tm_1 (HMM E-Value=1.3e-05)                 29   4.3  
SB_7037| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.3  
SB_20853| Best HMM Match : F-box (HMM E-Value=1.1e-05)                 28   5.7  
SB_7673| Best HMM Match : DUF805 (HMM E-Value=2.3)                     28   5.7  
SB_34912| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_21140| Best HMM Match : Peptidase_C14 (HMM E-Value=0)               28   7.6  

>SB_23713| Best HMM Match : Disintegrin (HMM E-Value=6.6e-05)
          Length = 1154

 Score = 31.1 bits (67), Expect = 0.81
 Identities = 19/75 (25%), Positives = 33/75 (44%)
 Frame = +2

Query: 233 SVEATAPPRQHYDEFASATTVASEIQGFRYLRNGTAGVHTKAGVVYYDLDTLQRSKRAVI 412
           ++ A      HY      T  A + + +RYL      +H   G  Y  L+T  R+    +
Sbjct: 637 TIHALKGETYHYLNTNRTTIHALKGETYRYLNANRTTIHALKGETYRYLNT-NRTTIHAL 695

Query: 413 YGDYNRYVETDDTVL 457
            G+Y RY+ ++ T +
Sbjct: 696 KGEYYRYLNSNRTTI 710



 Score = 30.3 bits (65), Expect = 1.4
 Identities = 18/65 (27%), Positives = 30/65 (46%)
 Frame = +2

Query: 263 HYDEFASATTVASEIQGFRYLRNGTAGVHTKAGVVYYDLDTLQRSKRAVIYGDYNRYVET 442
           HY      T  A + + +RYL      +H   G  Y  L+T  R+    + G+Y RY+ +
Sbjct: 503 HYLNSNRTTIHALKGEYYRYLNANRTTIHALKGETYRYLNT-NRTTIHALKGEYYRYLNS 561

Query: 443 DDTVL 457
           + T +
Sbjct: 562 NRTTI 566



 Score = 28.3 bits (60), Expect = 5.7
 Identities = 18/75 (24%), Positives = 32/75 (42%)
 Frame = +2

Query: 233 SVEATAPPRQHYDEFASATTVASEIQGFRYLRNGTAGVHTKAGVVYYDLDTLQRSKRAVI 412
           ++ A      HY      T  AS+ + +RYL      +H   G  Y  L++  R+    +
Sbjct: 745 TIHALKGEHYHYLNSNRKTIHASKGETYRYLNTNRTTIHALKGEYYRYLNS-NRTTIHAL 803

Query: 413 YGDYNRYVETDDTVL 457
            G+  RY+  + T +
Sbjct: 804 KGETYRYLNANRTTI 818


>SB_6560| Best HMM Match : F-box (HMM E-Value=2e-10)
          Length = 216

 Score = 31.1 bits (67), Expect = 0.81
 Identities = 22/72 (30%), Positives = 34/72 (47%)
 Frame = +3

Query: 15  TXXLSXIFTFLPAKQLTKCREVCIRWKNVIDTLNKYHSLWYKFCGKDFKNVYKFAHRLSR 194
           T  L  IF+ L A+ L  C +VC +W  V    + +  L ++ C K  +N+      L R
Sbjct: 6   TDVLLHIFSHLDAQSLCSCSQVCKQWYEVSTISSLWKMLVFQQCRK--RNI---RPHLGR 60

Query: 195 PQITWHELYRSL 230
            + TW E +  L
Sbjct: 61  AE-TWKERFFQL 71


>SB_22037| Best HMM Match : Xan_ur_permease (HMM E-Value=2e-07)
          Length = 445

 Score = 31.1 bits (67), Expect = 0.81
 Identities = 21/59 (35%), Positives = 26/59 (44%)
 Frame = -1

Query: 314 SPGFRWPPWLLTRIRRSAV*EVQLPPQSQRPVELVPSDLRTGEPVSEFVNVFKVLSAKL 138
           SP FR  PWL  R     +   Q P  S +PV   PS  + G P      VF +L+  L
Sbjct: 77  SPVFRLFPWLYGRQSGKVLNARQFPIYSNKPVNCQPS--QWGTPTVSAAGVFGMLAGVL 133


>SB_10275| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 947

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 23/66 (34%), Positives = 30/66 (45%)
 Frame = +3

Query: 12  STXXLSXIFTFLPAKQLTKCREVCIRWKNVIDTLNKYHSLWYKFCGKDFKNVYKFAHRLS 191
           S+  LS I ++LPAK L    E C R+K +    +   +LW   C K F      A R  
Sbjct: 20  SSEVLSIILSYLPAKTLLNLSETCRRFKELCFECD---TLWKDLC-KQFS-----ASRDL 70

Query: 192 RPQITW 209
           RP   W
Sbjct: 71  RPSKIW 76


>SB_43342| Best HMM Match : F-box (HMM E-Value=4.1e-09)
          Length = 456

 Score = 25.4 bits (53), Expect(2) = 2.4
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 33  IFTFLPAKQLTKCREVCIRW 92
           IF++L    L K  EVC RW
Sbjct: 57  IFSYLSRADLLKAAEVCKRW 76



 Score = 22.6 bits (46), Expect(2) = 2.4
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +3

Query: 207 WHELYRSLTLWRQLHL 254
           WHEL    +LWR + L
Sbjct: 76  WHELSFDRSLWRNVDL 91


>SB_26957| Best HMM Match : PDZ (HMM E-Value=0)
          Length = 1685

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 21/51 (41%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
 Frame = +3

Query: 63  TKCREVCIRWKNVID--TLNKYHSLWYKFCGKDFK-NVYKFAHRLSRPQIT 206
           T+CREV I    V    +L KYH LW  F GK  K +  K  +   RP +T
Sbjct: 31  TRCREVGITLFTVSHRKSLWKYHELWPLFSGKLVKPHPSKLFYIPQRPYMT 81


>SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0)
          Length = 2858

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
 Frame = +2

Query: 200  DHLARAL-QVSDSVEATAPPRQHYDEFASATTVASEIQGFRYLRNGTAGVHTKAGVVYYD 376
            D+L + L Q+    E  +  R  Y++ AS   +   I+G R L+    G H     + Y+
Sbjct: 2477 DNLQKRLAQLEAEQEIYSKTRMDYEDSASTPPLLLLIRGARNLQQELLGAHKMISHMDYE 2536

Query: 377  LDTLQRSKRAVI 412
            L T++     +I
Sbjct: 2537 LRTVREKYETLI 2548


>SB_55795| Best HMM Match : 7tm_1 (HMM E-Value=3.9e-08)
          Length = 363

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +1

Query: 88  AGRTSSIPSTNTIHCGISFAERTLKTFTNSLT 183
           +G TS  P+TNTI   +   E TL    N LT
Sbjct: 2   SGTTSGKPNTNTIAIAVFLGEGTLAAVANVLT 33


>SB_38076| Best HMM Match : 7tm_1 (HMM E-Value=1.3e-05)
          Length = 577

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +1

Query: 88  AGRTSSIPSTNTIHCGISFAERTLKTFTNSLT 183
           +G TS  P+TNTI   +   E TL    N LT
Sbjct: 2   SGTTSGKPNTNTIAIAVFLGEGTLAAVANVLT 33


>SB_7037| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 100

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +1

Query: 88  AGRTSSIPSTNTIHCGISFAERTLKTFTNSLT 183
           +G TS  P+TNTI   +   E TL    N LT
Sbjct: 2   SGTTSGKPNTNTIAIAVFLGEGTLAAVANVLT 33


>SB_20853| Best HMM Match : F-box (HMM E-Value=1.1e-05)
          Length = 637

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 16/69 (23%), Positives = 33/69 (47%)
 Frame = +3

Query: 24  LSXIFTFLPAKQLTKCREVCIRWKNVIDTLNKYHSLWYKFCGKDFKNVYKFAHRLSRPQI 203
           L  IF +  A  LTK   VC +W    ++++K  SLW +   + +++       +    +
Sbjct: 9   LLQIFRYFDAFILTKICSVCKQW----NSISKTPSLWRRLVLRRWQSQRFLFANVPPSSV 64

Query: 204 TWHELYRSL 230
            W ++Y+ +
Sbjct: 65  NWRKVYQEI 73


>SB_7673| Best HMM Match : DUF805 (HMM E-Value=2.3)
          Length = 100

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +1

Query: 88  AGRTSSIPSTNTIHCGISFAERTLKTFTNSLT 183
           +G TS  P+TNTI   +   E TL    N LT
Sbjct: 2   SGTTSGKPNTNTIAIAVFLGEGTLGAVANVLT 33


>SB_34912| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 554

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 16/66 (24%), Positives = 31/66 (46%)
 Frame = +3

Query: 51  AKQLTKCREVCIRWKNVIDTLNKYHSLWYKFCGKDFKNVYKFAHRLSRPQITWHELYRSL 230
           A+   KC ++   W+++I  +  Y+S     CG     +Y+    ++RP   +++  R L
Sbjct: 276 ARPYYKCTKLLQMWRDLITNVPSYYS-----CGATLLQMYQVITDVARP---YYKCTRLL 327

Query: 231 TLWRQL 248
             W  L
Sbjct: 328 QFWHDL 333


>SB_21140| Best HMM Match : Peptidase_C14 (HMM E-Value=0)
          Length = 377

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = +2

Query: 194 SSDHLARALQ--VSDSVEATAPPRQHYDEFASATTVASE 304
           ++ HLA  LQ  +S   + T PP+QH ++    T V S+
Sbjct: 80  ANTHLALILQANISAGTQETEPPKQHKEKLPVKTPVESD 118


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,677,769
Number of Sequences: 59808
Number of extensions: 408256
Number of successful extensions: 1122
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1037
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1119
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)