Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0060
         (650 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY118494-1|AAM49863.1|  740|Drosophila melanogaster LD05535p pro...    30   3.1  
AE013599-2751|AAF57649.3|  740|Drosophila melanogaster CG15087-P...    30   3.1  
AY060679-1|AAL28227.1|  338|Drosophila melanogaster GH11818p pro...    28   9.6  
AE013599-3656|AAF47039.2|  364|Drosophila melanogaster CG5428-PA...    28   9.6  

>AY118494-1|AAM49863.1|  740|Drosophila melanogaster LD05535p
           protein.
          Length = 740

 Score = 29.9 bits (64), Expect = 3.1
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +2

Query: 350 TKAGVVYYDLDTLQRSKRAVIYGDYNRYVETDDTVLLMNSN 472
           T+A VV  D  TL    + ++Y +YN+++   DT+  M  +
Sbjct: 37  TEAAVVK-DTQTLHSDMQTLVYENYNKFISATDTIRRMKDD 76


>AE013599-2751|AAF57649.3|  740|Drosophila melanogaster CG15087-PA
           protein.
          Length = 740

 Score = 29.9 bits (64), Expect = 3.1
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +2

Query: 350 TKAGVVYYDLDTLQRSKRAVIYGDYNRYVETDDTVLLMNSN 472
           T+A VV  D  TL    + ++Y +YN+++   DT+  M  +
Sbjct: 37  TEAAVVK-DTQTLHSDMQTLVYENYNKFISATDTIRRMKDD 76


>AY060679-1|AAL28227.1|  338|Drosophila melanogaster GH11818p
           protein.
          Length = 338

 Score = 28.3 bits (60), Expect = 9.6
 Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = +2

Query: 251 PPRQHYDEFASATTVAS-EIQGFRYLRNGTAGVH 349
           P   H  EF S    A  E++ FR++R G  G H
Sbjct: 266 PACNHVKEFESMKAAAGREVEEFRFVRRGVVGSH 299


>AE013599-3656|AAF47039.2|  364|Drosophila melanogaster CG5428-PA
           protein.
          Length = 364

 Score = 28.3 bits (60), Expect = 9.6
 Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = +2

Query: 251 PPRQHYDEFASATTVAS-EIQGFRYLRNGTAGVH 349
           P   H  EF S    A  E++ FR++R G  G H
Sbjct: 292 PACNHVKEFESMKAAAGREVEEFRFVRRGVVGSH 325


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,012,092
Number of Sequences: 53049
Number of extensions: 578037
Number of successful extensions: 1872
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1872
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2765538900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)