Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0060
         (650 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039042-12|AAC48249.1|  352|Caenorhabditis elegans Hypothetical...    33   0.23 
U13072-6|AAK31399.1|  327|Caenorhabditis elegans Hypothetical pr...    32   0.31 
Z49968-5|CAE47470.1| 1155|Caenorhabditis elegans Hypothetical pr...    29   2.2  
Z49968-4|CAA90261.1| 1156|Caenorhabditis elegans Hypothetical pr...    29   2.2  
U29613-3|AAC47062.2|  483|Caenorhabditis elegans Hypothetical pr...    28   5.0  
U55365-11|AAA98576.2|  357|Caenorhabditis elegans Hypothetical p...    28   6.6  
Z81492-9|CAB04026.2|  805|Caenorhabditis elegans Hypothetical pr...    27   8.7  
U13875-10|AAA21159.1|  332|Caenorhabditis elegans F-box synaptic...    27   8.7  

>AF039042-12|AAC48249.1|  352|Caenorhabditis elegans Hypothetical
           protein ZK697.1 protein.
          Length = 352

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = -2

Query: 157 KSFPQNLYHNEWYLLRVSMTFFQRMQTSRHFVNCFAGRKVKXNDN 23
           K FP +  HN W L+ +  +FF +  T    +  FA R  K ++N
Sbjct: 28  KFFPTSRCHNVWNLIFIHSSFFNKYSTMEFLI--FAARSYKEHEN 70


>U13072-6|AAK31399.1|  327|Caenorhabditis elegans Hypothetical
           protein C07D10.1 protein.
          Length = 327

 Score = 32.3 bits (70), Expect = 0.31
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 33  IFTFLPAKQLTKCREVCIRWKNVIDTLNKYHS 128
           +F  + A  L +CR VC +W + I  LN+Y S
Sbjct: 16  VFKSVDAATLQRCRRVCTKWNSEILRLNEYTS 47


>Z49968-5|CAE47470.1| 1155|Caenorhabditis elegans Hypothetical
           protein M110.4b protein.
          Length = 1155

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 3/86 (3%)
 Frame = +2

Query: 47  TSETVDEMPGSLHPLEERHRYPQQIPFIVV*VLRKGL*KRLQIRSPALPSSDHLAR-ALQ 223
           T E ++++   LH  + RH  P  +P  V   ++  +     +  PAL  +   A  A Q
Sbjct: 185 TLEFLNQVKNELHHEDRRHDNPPAVPAAVPAAVQAAVLPNFSVPPPALGQTPPAASIAPQ 244

Query: 224 VSDSVEAT--APPRQHYDEFASATTV 295
           V  SV  T  AP +  Y+   + T V
Sbjct: 245 VVPSVPKTPEAPAKADYEVKQAETLV 270


>Z49968-4|CAA90261.1| 1156|Caenorhabditis elegans Hypothetical
           protein M110.4a protein.
          Length = 1156

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 3/86 (3%)
 Frame = +2

Query: 47  TSETVDEMPGSLHPLEERHRYPQQIPFIVV*VLRKGL*KRLQIRSPALPSSDHLAR-ALQ 223
           T E ++++   LH  + RH  P  +P  V   ++  +     +  PAL  +   A  A Q
Sbjct: 185 TLEFLNQVKNELHHEDRRHDNPPAVPAAVPAAVQAAVLPNFSVPPPALGQTPPAASIAPQ 244

Query: 224 VSDSVEAT--APPRQHYDEFASATTV 295
           V  SV  T  AP +  Y+   + T V
Sbjct: 245 VVPSVPKTPEAPAKADYEVKQAETLV 270


>U29613-3|AAC47062.2|  483|Caenorhabditis elegans Hypothetical
           protein K02A6.3a protein.
          Length = 483

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 28/102 (27%), Positives = 43/102 (42%)
 Frame = +3

Query: 24  LSXIFTFLPAKQLTKCREVCIRWKNVIDTLNKYHSLWYKFCGKDFKNVYKFAHRLSRPQI 203
           L  IF  LP K   +C +VC +W+   ++       W KF  +D      F  R      
Sbjct: 15  LEDIFQRLPVKNKGRCSQVCRQWQRGFNS----KLSWRKFTFQD----GIFVRRKYTQHS 66

Query: 204 TWHELYRSLTLWRQLHLLDSTTTNSRQQPRWPAKSRASDIYE 329
            W   Y  +  WR  +L+ +TT++ R     P  S   ++YE
Sbjct: 67  GWQ--YH-IDHWRLKNLITNTTSSWRTLNVEPV-SNIFNLYE 104


>U55365-11|AAA98576.2|  357|Caenorhabditis elegans Hypothetical
           protein C12D5.10 protein.
          Length = 357

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -1

Query: 206 SDLRTGEPVSEFVNVFKVLSAKLIP 132
           ++LR  EPVS+F   F  L AKL+P
Sbjct: 193 NELRCNEPVSQFSLQFVTLFAKLMP 217


>Z81492-9|CAB04026.2|  805|Caenorhabditis elegans Hypothetical
           protein E03H4.4 protein.
          Length = 805

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 53  ETVDEMPGSLHPLEERHRYPQQIPF 127
           ETVD M   LHP+   H  P +I +
Sbjct: 544 ETVDNMTSVLHPINYIHMNPSEISY 568


>U13875-10|AAA21159.1|  332|Caenorhabditis elegans F-box synaptic
           protein protein 1 protein.
          Length = 332

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/43 (30%), Positives = 18/43 (41%)
 Frame = +3

Query: 24  LSXIFTFLPAKQLTKCREVCIRWKNVIDTLNKYHSLWYKFCGK 152
           L+ IF +LP K L      C  W N +   +    +W    GK
Sbjct: 90  LNQIFQYLPLKDLRSAMLTCHSWNNALSMEDS--DIWQYLLGK 130


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,428,039
Number of Sequences: 27780
Number of extensions: 297121
Number of successful extensions: 852
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 843
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 852
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)