Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0060
         (650 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               24   1.5  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          22   4.5  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   4.5  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    22   4.5  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    22   5.9  
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    22   5.9  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    22   5.9  

>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -3

Query: 585 RYVINYVVYHIKQFTIIMRNTS 520
           R VI+YV +HI Q+ I   N++
Sbjct: 119 RCVIDYVKFHITQYMISNANSN 140


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/35 (25%), Positives = 18/35 (51%)
 Frame = +3

Query: 159 KNVYKFAHRLSRPQITWHELYRSLTLWRQLHLLDS 263
           KN+Y+    + +P +   ELY+    +  +  LD+
Sbjct: 36  KNIYELFWHVDQPTVYHPELYQKARTFNLVENLDN 70


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/35 (25%), Positives = 18/35 (51%)
 Frame = +3

Query: 159 KNVYKFAHRLSRPQITWHELYRSLTLWRQLHLLDS 263
           KN+Y+    + +P +   ELY+    +  +  LD+
Sbjct: 36  KNIYELFWHVDQPTVYHPELYQKARTFNLVENLDN 70


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = +2

Query: 302 EIQG-FRYLRNGTAGVHTKAGVVYYDLDTLQR 394
           EI G F     GT G HT+A    YD+   +R
Sbjct: 298 EIAGKFNLQVRGTRGEHTEAEGGIYDISNKRR 329


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 371 YDLDTLQRSKRAVIYGDYNR 430
           YD D  +R + A+  G+Y+R
Sbjct: 47  YDFDNDERRQAAIQSGEYDR 66


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 344 VHTKAGVVYYDLDTLQR 394
           V T AG+V Y  DT++R
Sbjct: 222 VTTVAGIVSYPFDTVRR 238


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 344 VHTKAGVVYYDLDTLQR 394
           V T AG+V Y  DT++R
Sbjct: 222 VTTVAGIVSYPFDTVRR 238


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,161
Number of Sequences: 438
Number of extensions: 3741
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)