Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0060
         (650 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g47300.1 68418.m05831 F-box family protein contains Pfam PF00...    30   1.2  
At4g02030.1 68417.m00273 expressed protein                             29   3.5  
At3g54480.2 68416.m06028 SKP1 interacting partner 5 (SKIP5) iden...    28   4.7  
At3g54480.1 68416.m06027 SKP1 interacting partner 5 (SKIP5) iden...    28   4.7  
At1g76880.1 68414.m08946 trihelix DNA-binding protein, putative ...    28   4.7  
At3g23950.1 68416.m03008 F-box family protein contains Pfam:PF00...    28   6.2  
At1g76890.2 68414.m08948 trihelix DNA-binding protein / GT-2 fac...    28   6.2  
At1g76890.1 68414.m08947 trihelix DNA-binding protein / GT-2 fac...    28   6.2  
At3g49960.1 68416.m05463 peroxidase, putative identical to perox...    27   8.2  
At2g03610.1 68415.m00321 F-box family protein contains F-box dom...    27   8.2  
At1g32140.1 68414.m03954 F-box family protein contains F-box dom...    27   8.2  

>At5g47300.1 68418.m05831 F-box family protein contains Pfam
           PF00646: F-box domain; contains TIGRFAM TIGR01640: F-box
           protein interaction domain; similar to unknown protein
           (emb|CAB62106.1)
          Length = 416

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 20/80 (25%), Positives = 37/80 (46%)
 Frame = +3

Query: 24  LSXIFTFLPAKQLTKCREVCIRWKNVIDTLNKYHSLWYKFCGKDFKNVYKFAHRLSRPQI 203
           L  I   +PA  L + R  C +W N+ +   ++         KDF+N+     R+    +
Sbjct: 51  LEEILCRVPATSLKQLRSTCKQWNNLFNN-GRFTRKHLDKAPKDFQNLMLSDSRVFSMSV 109

Query: 204 TWHELYRSLTLWRQLHLLDS 263
           ++H +  S+    +L L+DS
Sbjct: 110 SFHGI-PSVEATCELSLIDS 128


>At4g02030.1 68417.m00273 expressed protein
          Length = 694

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 9/34 (26%), Positives = 20/34 (58%)
 Frame = +2

Query: 374 DLDTLQRSKRAVIYGDYNRYVETDDTVLLMNSNL 475
           ++  L    + ++Y +YN+++   DT+  M SN+
Sbjct: 76  EIKNLDTDLQMLVYENYNKFISATDTIKRMKSNI 109


>At3g54480.2 68416.m06028 SKP1 interacting partner 5 (SKIP5)
           identical to GP:14348816 SKP1-interacting partner 5
           {Arabidopsis thaliana}
          Length = 118

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = -1

Query: 515 CLGYVLVFLL*TNVDCYSSGVLCRRFRHSGCSRRK*LRV 399
           CL ++L FL     D Y++ ++C R+R+  C  R  LRV
Sbjct: 42  CLMHILSFLS-PIPDRYNTALVCHRWRYLACHPRLWLRV 79


>At3g54480.1 68416.m06027 SKP1 interacting partner 5 (SKIP5)
           identical to GP:14348816 SKP1-interacting partner 5
           {Arabidopsis thaliana}
          Length = 274

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = -1

Query: 515 CLGYVLVFLL*TNVDCYSSGVLCRRFRHSGCSRRK*LRV 399
           CL ++L FL     D Y++ ++C R+R+  C  R  LRV
Sbjct: 42  CLMHILSFLS-PIPDRYNTALVCHRWRYLACHPRLWLRV 79


>At1g76880.1 68414.m08946 trihelix DNA-binding protein, putative
           similar to DNA-binding protein DF1 [Pisum sativum]
           GI:13646986
          Length = 603

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 13/87 (14%)
 Frame = +3

Query: 138 KFCGKDFKNVYKFAHRLSRPQITWHELYRSLTLWRQLHLLDSTTTNS-----RQQPRWPA 302
           K C + F+NVYK+ H+ ++   T     ++   + QL  L+S +T S     +Q P  P 
Sbjct: 108 KKCKEKFENVYKY-HKRTKEGRTGKSEGKTYRFFDQLEALESQSTTSLHHHQQQTPLRPQ 166

Query: 303 K--------SRASDIYETERPASTLKP 359
           +        +  S I+ T  P +T+ P
Sbjct: 167 QNNNNNNNNNNNSSIFSTPPPVTTVMP 193


>At3g23950.1 68416.m03008 F-box family protein contains Pfam:PF00646
           F-box domain
          Length = 418

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +3

Query: 45  LPAKQLTKCREVCIRWKNVIDT 110
           LP K L + R +C  WK VID+
Sbjct: 15  LPLKSLARFRSMCKEWKLVIDS 36


>At1g76890.2 68414.m08948 trihelix DNA-binding protein / GT-2 factor
           (GT2) identical to GT2 factor [Arabidopsis thaliana]
           GI:416490, GI:2664202 (DNA binding factor GT-2 from
           Arabidopsis)
          Length = 575

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 19/76 (25%), Positives = 36/76 (47%)
 Frame = +3

Query: 138 KFCGKDFKNVYKFAHRLSRPQITWHELYRSLTLWRQLHLLDSTTTNSRQQPRWPAKSRAS 317
           K C + F+NVYK+ H+ ++   T     ++   + +L   ++ ++   +    PAKS A 
Sbjct: 88  KKCKEKFENVYKY-HKRTKEGRTGKSEGKTYRFFEELEAFETLSSYQPEPESQPAKSSA- 145

Query: 318 DIYETERPASTLKPAW 365
               T  PA++    W
Sbjct: 146 --VITNAPATSSLIPW 159


>At1g76890.1 68414.m08947 trihelix DNA-binding protein / GT-2 factor
           (GT2) identical to GT2 factor [Arabidopsis thaliana]
           GI:416490, GI:2664202 (DNA binding factor GT-2 from
           Arabidopsis)
          Length = 498

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 19/76 (25%), Positives = 36/76 (47%)
 Frame = +3

Query: 138 KFCGKDFKNVYKFAHRLSRPQITWHELYRSLTLWRQLHLLDSTTTNSRQQPRWPAKSRAS 317
           K C + F+NVYK+ H+ ++   T     ++   + +L   ++ ++   +    PAKS A 
Sbjct: 11  KKCKEKFENVYKY-HKRTKEGRTGKSEGKTYRFFEELEAFETLSSYQPEPESQPAKSSA- 68

Query: 318 DIYETERPASTLKPAW 365
               T  PA++    W
Sbjct: 69  --VITNAPATSSLIPW 82


>At3g49960.1 68416.m05463 peroxidase, putative identical to
           peroxidase ATP21a [Arabidopsis thaliana]
           gi|1546696|emb|CAA67339
          Length = 329

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 111 LNKYHSLWYKFCGKDFKNVYKF 176
           L+  H+L +  CGK FK ++KF
Sbjct: 193 LSAAHTLGFAHCGKVFKRIHKF 214


>At2g03610.1 68415.m00321 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 216

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 15/50 (30%), Positives = 20/50 (40%)
 Frame = +3

Query: 24  LSXIFTFLPAKQLTKCREVCIRWKNVIDTLNKYHSLWYKFCGKDFKNVYK 173
           L  I   L +    + + VC  W +V  T   Y S W +  G  F   YK
Sbjct: 30  LRPILESLSSIDFHRAKTVCSDWYSVWKTCKGYDSKWNQNSGSIFDMAYK 79


>At1g32140.1 68414.m03954 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 591

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 362 VVYYDLDTLQRSKRAVIYGDYNRYVETD 445
           VV +D+D  +R+  A I GDY    E D
Sbjct: 312 VVVFDIDESERNNTAYIIGDYGCLKEVD 339


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,370,080
Number of Sequences: 28952
Number of extensions: 266991
Number of successful extensions: 795
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 795
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)