Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0054
         (659 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68117-1|CAA92181.2|  459|Caenorhabditis elegans Hypothetical pr...    28   6.8  
Z48178-5|CAA88205.1|  413|Caenorhabditis elegans Hypothetical pr...    27   8.9  

>Z68117-1|CAA92181.2|  459|Caenorhabditis elegans Hypothetical
           protein F45E6.3 protein.
          Length = 459

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +1

Query: 271 QLMSFPSEYSFPKTVTRKQCYRLLGNSVNVKVISELLQILF 393
           Q   +  ++S    V RK C+ L+ N +N  +I  + +ILF
Sbjct: 200 QFFEYSYKFSQESLVFRKNCFNLMPNILNQFIIKIVERILF 240


>Z48178-5|CAA88205.1|  413|Caenorhabditis elegans Hypothetical
           protein C05C10.4 protein.
          Length = 413

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +2

Query: 524 IRCYIFANFLYKKKIEEGECAIIGTRCTSYMLYIE*Y 634
           +R  +  N ++ +  E+  CA +G  CTSY+  ++ Y
Sbjct: 273 VRSGVIINEVFNRANEKLNCAELGQNCTSYLNKLKFY 309


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,175,896
Number of Sequences: 27780
Number of extensions: 248551
Number of successful extensions: 461
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 461
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)