Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0054
         (659 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        25   0.85 
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        25   0.85 
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        25   0.85 
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   6.0  

>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 24.6 bits (51), Expect = 0.85
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = -3

Query: 213 SSLPTSK*LANFKYFCTMS*LVSVNTEPVPST 118
           +++PTS+  A+++YFC     V ++    P T
Sbjct: 271 AAIPTSENPADYRYFCPDGSKVPIDANTKPCT 302


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 24.6 bits (51), Expect = 0.85
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = -3

Query: 213 SSLPTSK*LANFKYFCTMS*LVSVNTEPVPST 118
           +++PTS+  A+++YFC     V ++    P T
Sbjct: 271 AAIPTSENPADYRYFCPDGSKVPIDANTKPCT 302


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 24.6 bits (51), Expect = 0.85
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = -3

Query: 213 SSLPTSK*LANFKYFCTMS*LVSVNTEPVPST 118
           +++PTS+  A+++YFC     V ++    P T
Sbjct: 271 AAIPTSENPADYRYFCPDGSKVPIDANTKPCT 302


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +2

Query: 47  ANIFDICYADSNRSCCFTKAYTHYVEGT 130
           A+I ++C    +R C  TK   + V+ T
Sbjct: 127 ASILNLCMISVDRFCAITKPLKYGVKRT 154


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,785
Number of Sequences: 438
Number of extensions: 2816
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19855845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)