Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0052
         (650 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      22   3.8  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      22   3.8  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    22   3.8  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    22   5.0  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    22   5.0  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +2

Query: 65  PCRPTNEALARRGRHG 112
           PCRP  +   RR  HG
Sbjct: 589 PCRPREQLTWRRNFHG 604


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +2

Query: 65  PCRPTNEALARRGRHG 112
           PCRP  +   RR  HG
Sbjct: 481 PCRPREQLTWRRNFHG 496


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -3

Query: 390 PRLINVSLPYFGDTFT 343
           P+ + V +P++G TFT
Sbjct: 259 PKKLIVGIPFYGRTFT 274


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -3

Query: 543 QNPRLSWNRTHKTK 502
           QN R+ W + +KTK
Sbjct: 291 QNRRMKWKKENKTK 304


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -3

Query: 543 QNPRLSWNRTHKTK 502
           QN R+ W + +KTK
Sbjct: 293 QNRRMKWKKENKTK 306


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,774
Number of Sequences: 336
Number of extensions: 2770
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16760905
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)