Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0052
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr 2...    26   4.1  
SPCP1E11.04c |pal1||membrane associated protein Pal1 |Schizosacc...    26   5.4  
SPCP31B10.02 |||conserved eukaryotic protein|Schizosaccharomyces...    25   9.5  

>SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 474

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +2

Query: 302 KALGVDFILIVIICVNVSPKYGSDTLINL 388
           K LG+DF + +++C     +YGS+ L +L
Sbjct: 147 KELGIDFPVNLLMCFEGMEEYGSEGLEDL 175


>SPCP1E11.04c |pal1||membrane associated protein Pal1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 425

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 32  EPKPTSPARGAPCRPTNEALARR 100
           EP P S A  +P + + EALA R
Sbjct: 64  EPSPASSASASPVKKSAEALAER 86


>SPCP31B10.02 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 143

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -2

Query: 121 DGGSVTTTPRQSLVCWSAGCAAC 53
           DG  V   P + L C  +GCA C
Sbjct: 50  DGIRVPPKPEEPLNCCQSGCAIC 72


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,417,023
Number of Sequences: 5004
Number of extensions: 44919
Number of successful extensions: 108
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)