Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0052
         (650 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    23   3.4  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    22   4.5  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   7.8  

>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +2

Query: 479 LSTVLLNRFVLWVRFHDKR 535
           LS V++  F+ W  FH +R
Sbjct: 262 LSAVVITFFICWAPFHVQR 280


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +2

Query: 479 LSTVLLNRFVLWVRFHDKR 535
           LS V++  F+ W  FH +R
Sbjct: 272 LSAVVILFFICWAPFHTQR 290


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 19/74 (25%), Positives = 32/74 (43%)
 Frame = +2

Query: 221 VRLRSHTYPISFYIRLVKHFQ*YGLLSKALGVDFILIVIICVNVSPKYGSDTLINLGYCL 400
           V L   T  ISF   LV +          LG+  +L +++ + +  K    T + L    
Sbjct: 238 VNLILPTVLISFLCVLVFYLPAEAGEKVTLGISILLSLVVFLLLVSKILPPTSLVLPLIA 297

Query: 401 RSLVSTFLQRTPAI 442
           + L+ TF+  T +I
Sbjct: 298 KYLLFTFIMNTVSI 311


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,550
Number of Sequences: 438
Number of extensions: 3323
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)