Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0052
         (650 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g06860.1 68415.m00768 Ulp1 protease family protein contains P...    28   4.7  
At3g12980.1 68416.m01617 histone acetyltransferase 5 (HAC5) iden...    27   8.2  
At2g16990.1 68415.m01959 expressed protein                             27   8.2  

>At2g06860.1 68415.m00768 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain
          Length = 938

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = +1

Query: 394 LSQVSGVNVSPKNTGDTRIVINYDYYN*FKHSTF 495
           +S V+G   SPK +GD   V  Y YY    H TF
Sbjct: 483 ISSVTGAVTSPKLSGDNEEVSCYPYYQ--NHYTF 514


>At3g12980.1 68416.m01617 histone acetyltransferase 5 (HAC5) identical
            to HAC5 (GI:21105780) [Arabidopsis thaliana]; similar to
            CREB-binding protein GB:S39162 from [Homo sapiens]
          Length = 1670

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -2

Query: 94   RQSLVCWSAGCAACRRGW 41
            R  LVC + GC AC++ W
Sbjct: 1594 RHGLVCKTRGCIACKKMW 1611


>At2g16990.1 68415.m01959 expressed protein
          Length = 456

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = +2

Query: 290 GLLSKALGVDFILIVIICVNVSPKYGSDTLINLGYCL 400
           G    A+G+  ++++ +  N+S +YG  T++ L  CL
Sbjct: 53  GFQQVAIGMGTMIMMPVIGNLSDRYGIKTILTLPMCL 89


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,345,199
Number of Sequences: 28952
Number of extensions: 226286
Number of successful extensions: 474
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 474
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)