Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0051
         (660 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1027 + 27000498-27000503,27001325-27002271,27002359-27002698     31   1.1  
02_01_0553 - 4078792-4079131,4079846-4080771                           31   1.1  
02_04_0272 - 21451536-21451644,21452308-21452366,21452729-214527...    30   1.9  
08_01_0778 + 7548307-7549220,7551682-7552021                           29   2.5  

>06_03_1027 + 27000498-27000503,27001325-27002271,27002359-27002698
          Length = 430

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 373 CHRSKIWCTMQDYARGRSP*NFFAR 447
           C +S +WC + +YA+G S   F AR
Sbjct: 217 CRKSIVWCIITEYAKGGSVRQFLAR 241


>02_01_0553 - 4078792-4079131,4079846-4080771
          Length = 421

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 373 CHRSKIWCTMQDYARGRSP*NFFAR 447
           C +S +WC + +YA+G S   F AR
Sbjct: 208 CRKSIVWCIITEYAKGGSVRQFLAR 232


>02_04_0272 -
           21451536-21451644,21452308-21452366,21452729-21452792,
           21453006-21453079,21453850-21453903,21453991-21454176
          Length = 181

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = +3

Query: 147 VNLYFGFEIYHIKELFLMIIS*ELSYLIRTSLNFKLNQ 260
           VNLYF F + H K L L+ I  E   L+   L+F  +Q
Sbjct: 118 VNLYFNFAMVHSKLLTLLAIILEFGALVWLLLDFPASQ 155


>08_01_0778 + 7548307-7549220,7551682-7552021
          Length = 417

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 373 CHRSKIWCTMQDYARGRSP*NFFAR 447
           C +  +WC + +YA+G S  NF  R
Sbjct: 204 CRKPMVWCIVTEYAKGGSVRNFLNR 228


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,176,861
Number of Sequences: 37544
Number of extensions: 217757
Number of successful extensions: 333
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 329
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 333
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)