Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0051
         (660 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g24360.1 68415.m02911 serine/threonine/tyrosine kinase, putat...    28   6.3  
At2g23050.1 68415.m02748 phototropic-responsive NPH3 family prot...    28   6.3  

>At2g24360.1 68415.m02911 serine/threonine/tyrosine kinase, putative
           similar to serine/threonine/tyrosine kinase [Arachis
           hypogaea] gi|13124865|gb|AAK11734
          Length = 411

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +1

Query: 373 CHRSKIWCTMQDYARGRSP*NFFAR 447
           C +  +WC + +YA+G S   F  R
Sbjct: 198 CRKPMVWCIVTEYAKGGSVRQFLTR 222


>At2g23050.1 68415.m02748 phototropic-responsive NPH3 family protein
           contains NPH3 family domain, Pfam:PF03000
          Length = 481

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +2

Query: 485 ELHMTSYQPVKHVIRNRSKTHLRLI*NLIHSYLVKII 595
           ELH+  Y+     I+NR K    +I   +H+Y ++ I
Sbjct: 215 ELHIDLYKQAIKAIKNRGKVPSNVIGEALHAYAIRRI 251


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,486,053
Number of Sequences: 28952
Number of extensions: 199941
Number of successful extensions: 304
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 301
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 304
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1383534864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)