Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0048
         (651 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    28   1.3  
SPCC1919.09 |tif6||translation initiation factor eIF6|Schizosacc...    26   5.4  
SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc...    25   7.2  
SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto...    25   7.2  
SPAC5H10.11 |gmh1||alpha-1,2-galactosyltransferase Gmh1|Schizosa...    25   7.2  
SPAC31G5.13 |rpn11|pad1, sks1, bfr2, mts5|19S proteasome regulat...    25   9.5  

>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = -2

Query: 296 SASENQVSLGSKSAGAPQSSGKSHDEPKTAPKSAAEREIGKRTTRR 159
           S  E++    SK    P+S  +SH E K+A K   +++  K  ++R
Sbjct: 591 SKHESKHKRDSKHEARPESKHESHRESKSAEKDKKDKKDKKEDSKR 636


>SPCC1919.09 |tif6||translation initiation factor
           eIF6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 244

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
 Frame = -3

Query: 301 ELQHLKTKFP---SAQKAQELLSHLGNLM 224
           ELQHL+   P     Q+  E LS LGN++
Sbjct: 80  ELQHLRNSLPDPVKIQRVDERLSALGNIV 108


>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 630

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 15/52 (28%), Positives = 23/52 (44%)
 Frame = -3

Query: 301 ELQHLKTKFPSAQKAQELLSHLGNLMTNPRRHQNQRQSEKSARGRLVESSMA 146
           E + LK  F   +K    LSHL  L +   RH+  +   +    RL  S ++
Sbjct: 134 EAESLKATFKRGKKDLSKLSHLSELESRIERHKWHQDKLELIMRRLENSQIS 185


>SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor
           Sec74|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 928

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
 Frame = -3

Query: 325 RSKIEQMFELQ-HLKTKFPSAQKAQELLSHLGNLMTNPRRHQNQRQSEKSAR-GRLVES 155
           +  +E    LQ +L++ FPS+   +E  S    L +N R H N      + R G+ VES
Sbjct: 809 KEDLEMDSHLQDYLRSVFPSSVMGKENASEDTILESNFRNHSNPSVRRSNLRVGKTVES 867


>SPAC5H10.11 |gmh1||alpha-1,2-galactosyltransferase
           Gmh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 329

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 10/45 (22%), Positives = 23/45 (51%)
 Frame = +1

Query: 55  LIEIMFKNALQLPRIDN*VFSVTSMNKFKIPPYYFRRVVLLPISR 189
           L++  FKN ++  ++ N  F   +++   +PP + +   +L   R
Sbjct: 104 LLDDCFKNRIEYAKLQNYNFEFVNVSSLVVPPVWGKMPAILQTMR 148


>SPAC31G5.13 |rpn11|pad1, sks1, bfr2, mts5|19S proteasome regulatory
           subunit Rpn11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 308

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = -3

Query: 643 RPSTSNCGYINQPNEGGWLHRRGLNCLLSVRLQHQ 539
           R +TSN G+IN+P+    +H  G +   S+R+ ++
Sbjct: 174 RQTTSNLGHINKPSIQALIHGLGRH-YYSLRINYK 207


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,811,688
Number of Sequences: 5004
Number of extensions: 58465
Number of successful extensions: 143
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)