Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0048
         (651 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1044 + 33728623-33728768,33728814-33728993,33729446-337295...    32   0.46 
06_03_0613 + 22748223-22749513,22750046-22750179,22751066-227513...    28   5.6  
04_04_1271 - 32282865-32283167,32283429-32283561,32283683-322839...    28   5.6  
05_01_0462 - 3658153-3658290,3658394-3658540,3658622-3658720,365...    28   7.4  

>02_05_1044 +
           33728623-33728768,33728814-33728993,33729446-33729523,
           33729834-33729930,33730206-33730339,33730944-33731025,
           33731631-33731717,33731875-33731981,33732674-33732845,
           33733018-33733259,33733482-33733563,33733954-33734019,
           33734040-33734159,33734935-33735012,33735083-33735178,
           33735791-33735897,33736031-33736199,33736402-33736452,
           33736567-33736650,33736946-33737040,33737175-33737265,
           33737342-33737488,33737614-33737676
          Length = 857

 Score = 31.9 bits (69), Expect = 0.46
 Identities = 22/89 (24%), Positives = 36/89 (40%), Gaps = 2/89 (2%)
 Frame = -3

Query: 490 EVWKNKTLLKGSRVIISEFLTKSRHDVFLEA--RSHFGVKRCWTTDGKIIVLLPDNKRSK 317
           E+WKN    K  +     F    RHD  L +      G  +  T+D   +V   +  +S 
Sbjct: 364 ELWKNGLPEKEQKYATGFFTVIKRHDALLPSILAQSDGSNQTKTSDDLFVVPYSEEYKSS 423

Query: 316 IEQMFELQHLKTKFPSAQKAQELLSHLGN 230
           +E+  EL H  ++   +   + LL    N
Sbjct: 424 LEKAAELLHKASECSDSPSLKNLLKTKAN 452


>06_03_0613 +
           22748223-22749513,22750046-22750179,22751066-22751309,
           22751401-22751609,22751691-22751740,22751933-22752053,
           22752138-22752383
          Length = 764

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 14/51 (27%), Positives = 30/51 (58%)
 Frame = -1

Query: 255 RSSSVIWEIS*RTQDGTKISGRARNRQEDDSSKVVWRYLELIHRCNTKNLV 103
           +SS V+   + + QDG+++S R    +   S + + +Y+E+I +   ++LV
Sbjct: 469 KSSPVVKHYNGQLQDGSRVSLRCLKLKPKYSPQSLTQYMEIISKLRHRHLV 519


>04_04_1271 -
           32282865-32283167,32283429-32283561,32283683-32283908,
           32284058-32284274,32284398-32284558,32285309-32285449,
           32285621-32286944
          Length = 834

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = +3

Query: 267 AEGNLVFRC*SSNICSILLRLLSGRRTIIFPSVVQQ 374
           A+GNL  +C   +   +LL ++SG+R    P+ +++
Sbjct: 699 AQGNLTLKCDVYSFGVVLLEIISGKRNRTLPTFLRE 734


>05_01_0462 -
           3658153-3658290,3658394-3658540,3658622-3658720,
           3658802-3659253,3659597-3660280,3662072-3662180
          Length = 542

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -3

Query: 274 PSAQKAQELLSHLGNLMTNPRRHQNQRQSEKSARGR 167
           P  +    + SHLG+   N  R+ N   S+++ RGR
Sbjct: 174 PPPESCVRMPSHLGSNHWNDHRYVNHEGSQRNVRGR 209


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,132,493
Number of Sequences: 37544
Number of extensions: 383552
Number of successful extensions: 934
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 905
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 932
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)