Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0048
         (651 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132874-5|CAI42607.1|  451|Homo sapiens minichromosome maintena...    31   4.7  
BC027994-1|AAH27994.1|  605|Homo sapiens beta-transducin repeat ...    30   8.2  
AL627424-17|CAI41042.1|  605|Homo sapiens beta-transducin repeat...    30   8.2  
AL445463-2|CAI12963.1|  605|Homo sapiens beta-transducin repeat ...    30   8.2  
AL445463-1|CAI12962.1|  191|Homo sapiens beta-transducin repeat ...    30   8.2  
AL133387-1|CAH70020.1|  605|Homo sapiens beta-transducin repeat ...    30   8.2  
AF101784-1|AAD08702.1|  605|Homo sapiens b-TRCP variant E3RS-Ika...    30   8.2  

>AL132874-5|CAI42607.1|  451|Homo sapiens minichromosome maintenance
           complex component 9 protein.
          Length = 451

 Score = 30.7 bits (66), Expect = 4.7
 Identities = 23/60 (38%), Positives = 36/60 (60%), Gaps = 4/60 (6%)
 Frame = -3

Query: 322 SKIEQMFELQHLKTKFPSAQKAQELLSHLGNLMTNPRRHQNQRQSE--KSARG--RLVES 155
           SK E+++ ++ +KT F   +  Q  LS +GN +   R +Q QRQS+   +AR   RL+ES
Sbjct: 356 SKSEKLWSMEKMKTYFCLIRNLQPTLSDVGNQVL-LRYYQMQRQSDCRNAARTTIRLLES 414


>BC027994-1|AAH27994.1|  605|Homo sapiens beta-transducin repeat
           containing protein.
          Length = 605

 Score = 29.9 bits (64), Expect = 8.2
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = +1

Query: 268 PRETWFSDAEVQTSVQSY-CVYYPGEGRLFSHLLSSSA*RRNESGPPKR 411
           PR  W   + +  S+ S  C+Y PG G L +   SS     N   PP++
Sbjct: 20  PRSLWLGCSSLADSMPSLRCLYNPGTGALTAFQNSSEREDCNNGEPPRK 68


>AL627424-17|CAI41042.1|  605|Homo sapiens beta-transducin repeat
           containing protein.
          Length = 605

 Score = 29.9 bits (64), Expect = 8.2
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = +1

Query: 268 PRETWFSDAEVQTSVQSY-CVYYPGEGRLFSHLLSSSA*RRNESGPPKR 411
           PR  W   + +  S+ S  C+Y PG G L +   SS     N   PP++
Sbjct: 20  PRSLWLGCSSLADSMPSLRCLYNPGTGALTAFQNSSEREDCNNGEPPRK 68


>AL445463-2|CAI12963.1|  605|Homo sapiens beta-transducin repeat
           containing protein.
          Length = 605

 Score = 29.9 bits (64), Expect = 8.2
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = +1

Query: 268 PRETWFSDAEVQTSVQSY-CVYYPGEGRLFSHLLSSSA*RRNESGPPKR 411
           PR  W   + +  S+ S  C+Y PG G L +   SS     N   PP++
Sbjct: 20  PRSLWLGCSSLADSMPSLRCLYNPGTGALTAFQNSSEREDCNNGEPPRK 68


>AL445463-1|CAI12962.1|  191|Homo sapiens beta-transducin repeat
           containing protein.
          Length = 191

 Score = 29.9 bits (64), Expect = 8.2
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = +1

Query: 268 PRETWFSDAEVQTSVQSY-CVYYPGEGRLFSHLLSSSA*RRNESGPPKR 411
           PR  W   + +  S+ S  C+Y PG G L +   SS     N   PP++
Sbjct: 2   PRSLWLGCSSLADSMPSLRCLYNPGTGALTAFQNSSEREDCNNGEPPRK 50


>AL133387-1|CAH70020.1|  605|Homo sapiens beta-transducin repeat
           containing protein.
          Length = 605

 Score = 29.9 bits (64), Expect = 8.2
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = +1

Query: 268 PRETWFSDAEVQTSVQSY-CVYYPGEGRLFSHLLSSSA*RRNESGPPKR 411
           PR  W   + +  S+ S  C+Y PG G L +   SS     N   PP++
Sbjct: 20  PRSLWLGCSSLADSMPSLRCLYNPGTGALTAFQNSSEREDCNNGEPPRK 68


>AF101784-1|AAD08702.1|  605|Homo sapiens b-TRCP variant
           E3RS-IkappaB protein.
          Length = 605

 Score = 29.9 bits (64), Expect = 8.2
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = +1

Query: 268 PRETWFSDAEVQTSVQSY-CVYYPGEGRLFSHLLSSSA*RRNESGPPKR 411
           PR  W   + +  S+ S  C+Y PG G L +   SS     N   PP++
Sbjct: 20  PRSLWLGCSSLADSMPSLRCLYNPGTGALTAFQNSSEREDCNNGEPPRK 68


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,372,796
Number of Sequences: 237096
Number of extensions: 2126935
Number of successful extensions: 4061
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3910
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4054
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7253890590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)