Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0048
         (651 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006708-26|AAF60419.1| 1724|Caenorhabditis elegans Holocentric ...    30   1.6  
AC006708-25|AAK68883.1| 1758|Caenorhabditis elegans Holocentric ...    30   1.6  
Z82073-5|CAB63322.1|  333|Caenorhabditis elegans Hypothetical pr...    29   2.2  
Z92806-4|CAB07259.1|  727|Caenorhabditis elegans Hypothetical pr...    28   5.0  
AC024817-40|AAF59577.4|  967|Caenorhabditis elegans Hypothetical...    28   6.6  
Z81481-2|CAB03948.1|  593|Caenorhabditis elegans Hypothetical pr...    27   8.7  
AC024794-1|AAK68497.1|  994|Caenorhabditis elegans Hypothetical ...    27   8.7  

>AC006708-26|AAF60419.1| 1724|Caenorhabditis elegans Holocentric
            chromosome bindingprotein protein 6, isoform a protein.
          Length = 1724

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 2/91 (2%)
 Frame = -3

Query: 475  KTLLKGSRVIISEFLTKSRHDVFLEARSHFGVKR-CWTTDGKIIVLLPDNKRSKIEQMFE 299
            KT++  S + + EFL + R    L+ +    ++  C      I  +L DN++ K E MFE
Sbjct: 1294 KTIVP-SILSLREFLNQHRSP--LQRKCLLAIRMICIEHKNDIDEILQDNRQLKDEMMFE 1350

Query: 298  LQHLKTKFPSAQK-AQELLSHLGNLMTNPRR 209
            LQ +K +   A +   E L  +       +R
Sbjct: 1351 LQRVKQRTEEANRILDEYLKRVAEFKKQQKR 1381


>AC006708-25|AAK68883.1| 1758|Caenorhabditis elegans Holocentric
            chromosome bindingprotein protein 6, isoform b protein.
          Length = 1758

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 2/91 (2%)
 Frame = -3

Query: 475  KTLLKGSRVIISEFLTKSRHDVFLEARSHFGVKR-CWTTDGKIIVLLPDNKRSKIEQMFE 299
            KT++  S + + EFL + R    L+ +    ++  C      I  +L DN++ K E MFE
Sbjct: 1294 KTIVP-SILSLREFLNQHRSP--LQRKCLLAIRMICIEHKNDIDEILQDNRQLKDEMMFE 1350

Query: 298  LQHLKTKFPSAQK-AQELLSHLGNLMTNPRR 209
            LQ +K +   A +   E L  +       +R
Sbjct: 1351 LQRVKQRTEEANRILDEYLKRVAEFKKQQKR 1381


>Z82073-5|CAB63322.1|  333|Caenorhabditis elegans Hypothetical
           protein W06D12.7 protein.
          Length = 333

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
 Frame = -3

Query: 373 CWTTDGKIIVLLPDNKRSKIEQMFELQHLKTKFPSAQKAQELLSH-LGNLMTNPRRHQNQ 197
           C      I+ +LPD +  K   +F L +L T   ++  + +L+SH L   MTN +  + +
Sbjct: 176 CIDNPNVIVPILPDAEGQKKSLVFFLMYLFTMATASILSAQLISHLLSKRMTN-QSDKTK 234

Query: 196 RQSEKSARGRLVESSMAVS*T 134
           +  +K  R  L +  + +S T
Sbjct: 235 KMHQKFNRRSLFQVLIDISFT 255


>Z92806-4|CAB07259.1|  727|Caenorhabditis elegans Hypothetical
           protein K10G4.4 protein.
          Length = 727

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = -3

Query: 322 SKIEQMFELQHLKTKFPSAQKAQELLSHLGNLMTNPRRHQNQRQSEKSAR 173
           S I QMFE+Q+L++   +   AQ+LL   G     P  H+    +E+  R
Sbjct: 499 SDIPQMFEIQYLRSSEVNVNVAQKLLEIFG-----PPAHEEYASAEQCDR 543


>AC024817-40|AAF59577.4|  967|Caenorhabditis elegans Hypothetical
           protein Y54G2A.21 protein.
          Length = 967

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
 Frame = +2

Query: 230 ISQMTEELLRFLSRGKLGFQMLKFKHL-FNLTAFIIREKDDYF-PICCPAALNAEMRAGL 403
           + +M +   +F +  +  FQ     HL   LT  ++ E  + F P  CP  L  +   G 
Sbjct: 665 LEKMEQCWAKFGADKQAWFQSFCGNHLKLLLTPAVVEETFNIFGPNLCPMLLGLKSAMGK 724

Query: 404 QKDIMT*FGQKF*ND 448
              IM+  G KF ND
Sbjct: 725 LSTIMSLSGNKFLND 739


>Z81481-2|CAB03948.1|  593|Caenorhabditis elegans Hypothetical
           protein C38D9.2 protein.
          Length = 593

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = -2

Query: 281 QVSLGSKSAG-APQSSGKSHDEPKTAPKSAAEREIGKRTTRRK*YGGILN 135
           Q +LG +S   APQ +      PK APK A E  I KRT     + G+ N
Sbjct: 441 QEALGMRSENVAPQWNHYPQPPPKEAPKEAIETTI-KRTESTCTFCGLYN 489


>AC024794-1|AAK68497.1|  994|Caenorhabditis elegans Hypothetical
           protein Y48G1BM.5 protein.
          Length = 994

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
 Frame = +2

Query: 284 FQMLKFKHL-FNLTAFIIREKDDYF-PICCPAALNAEMRAGLQKDIMT*FGQKF*ND 448
           FQ     HL   LT  ++ E  + F P  CP  L  +   G    IM+  G KF ND
Sbjct: 159 FQSFCGNHLKLLLTPAVVEETFNIFGPNLCPMLLGLKSAMGKLSTIMSLSGNKFLND 215


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,491,857
Number of Sequences: 27780
Number of extensions: 328740
Number of successful extensions: 810
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 810
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)