Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0044
         (661 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI000050F6DB Cluster: COG0545: FKBP-type peptidyl-prol...    33   4.6  
UniRef50_Q4YAY8 Cluster: Putative uncharacterized protein; n=1; ...    33   4.6  
UniRef50_Q7V4N0 Cluster: Putative uncharacterized protein precur...    33   6.1  
UniRef50_Q65XW9 Cluster: Putative uncharacterized protein; n=3; ...    33   8.0  
UniRef50_A0B692 Cluster: Putative uncharacterized protein precur...    33   8.0  

>UniRef50_UPI000050F6DB Cluster: COG0545: FKBP-type peptidyl-prolyl
           cis-trans isomerases 1; n=1; Brevibacterium linens
           BL2|Rep: COG0545: FKBP-type peptidyl-prolyl cis-trans
           isomerases 1 - Brevibacterium linens BL2
          Length = 314

 Score = 33.5 bits (73), Expect = 4.6
 Identities = 14/41 (34%), Positives = 25/41 (60%)
 Frame = -3

Query: 581 WPCNTKLYTRAYCNGRGPG*ITPNG*NEILEGKNETFVCKK 459
           W  N+K +  ++ +GRGP  + P+G  ++++G NE  V  K
Sbjct: 233 WDDNSKYFDSSWQDGRGPFAVDPDGQAQVIDGWNEGLVGAK 273


>UniRef50_Q4YAY8 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium berghei|Rep: Putative uncharacterized protein
           - Plasmodium berghei
          Length = 894

 Score = 33.5 bits (73), Expect = 4.6
 Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
 Frame = +2

Query: 302 KKKTKSLLFSIFHIIAHMIIWKEKNIYIF--VSFHFF*SSLKSQ-RFYRSFTSIYTFYTQ 472
           KKK  +L+   +  I +  I KE  IYIF  ++   F S  KS   FY +   IY    +
Sbjct: 12  KKKNFNLILKSYKEIVNNKIIKEGKIYIFNNLNIPIFVSPDKSNYLFYINKKYIYFKENK 71

Query: 473 KFHFYPPKF 499
            F+FY PKF
Sbjct: 72  YFYFYFPKF 80


>UniRef50_Q7V4N0 Cluster: Putative uncharacterized protein
           precursor; n=1; Prochlorococcus marinus str. MIT
           9313|Rep: Putative uncharacterized protein precursor -
           Prochlorococcus marinus (strain MIT 9313)
          Length = 600

 Score = 33.1 bits (72), Expect = 6.1
 Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
 Frame = -1

Query: 379 YIFFFPNYHVGYNMKDAEKKRFRFFFVLRHGVISTYTKI-FWGIIKKVPRP 230
           Y+ + P+ +VG +  DAE K  RF   LR  ++S YT I  + I+KK   P
Sbjct: 339 YLSYLPSLYVGGDRYDAELKFVRFVPDLRLFILSIYTAIRSFQILKKKETP 389


>UniRef50_Q65XW9 Cluster: Putative uncharacterized protein; n=3;
           Caenorhabditis|Rep: Putative uncharacterized protein -
           Caenorhabditis elegans
          Length = 462

 Score = 32.7 bits (71), Expect = 8.0
 Identities = 18/64 (28%), Positives = 34/64 (53%)
 Frame = +2

Query: 242 FFNYSPKYFCVS*YYPMAKNKKKTKSLLFSIFHIIAHMIIWKEKNIYIFVSFHFF*SSLK 421
           FF +S KY   S  +P   +KKK ++++F   ++   +   K+   +    F FF S+L 
Sbjct: 21  FFQFSAKYLEFSVNFPRKNSKKKLETIIFYEKNVEKTLFFTKQYFKFFNEKFQFF-SNLS 79

Query: 422 SQRF 433
           +++F
Sbjct: 80  NKKF 83


>UniRef50_A0B692 Cluster: Putative uncharacterized protein
           precursor; n=1; Methanosaeta thermophila PT|Rep:
           Putative uncharacterized protein precursor -
           Methanosaeta thermophila (strain DSM 6194 / PT)
           (Methanothrixthermophila (strain DSM 6194 / PT))
          Length = 480

 Score = 32.7 bits (71), Expect = 8.0
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = -1

Query: 367 FPNYHVGYNMKDAEKKRFRFFFVLRHGVISTYTKIFWG-IIKKVPRPL 227
           F N   G+  KD   K FR+++ +  G+  T T I WG  I+  P+ L
Sbjct: 275 FKNSEYGFFGKDDAGKAFRYYYTVGDGINVTSTNITWGPEIRPTPKLL 322


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 680,225,560
Number of Sequences: 1657284
Number of extensions: 14639283
Number of successful extensions: 30886
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 29610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30844
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 50000004659
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)