Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0044
         (661 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC543.08 |||phosphoinositide biosynthesis protein |Schizosacch...    25   9.7  
SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   9.7  
SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    25   9.7  

>SPBC543.08 |||phosphoinositide biosynthesis protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 250

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 8/21 (38%), Positives = 16/21 (76%)
 Frame = -1

Query: 310 FFFVLRHGVISTYTKIFWGII 248
           F F+L +G+ +T TK+ +G++
Sbjct: 177 FSFILNNGIKATSTKVLFGLL 197


>SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 646

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 16/64 (25%), Positives = 29/64 (45%)
 Frame = +3

Query: 360 FGKKKIYIFSFHFISFDRV*NHNDSIEVSLQYILFTHKSFIFTLQNFILPIWGNLPRSPT 539
           F  + + I SF  +S D+V    +    ++  + F    ++   Q  ILP W + P+  T
Sbjct: 579 FAIRFLKIISFPLLSNDKVLREIEFF--AIHEVNFRSLKWVADQQLRILPGWSSRPQKAT 636

Query: 540 VAIC 551
             +C
Sbjct: 637 FPLC 640


>SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 462

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +1

Query: 214 VCNKPAVGELF*LFPKIFLCKLILPHGEEQKKNEIASFQHLSYYSPH 354
           +CN P+      L P     K  + + E +  NEI +++H   YSP+
Sbjct: 100 ICNSPSKNHETSLSPS----KSTIDNNERKLDNEIDNYKHDVKYSPY 142


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,975,158
Number of Sequences: 5004
Number of extensions: 68699
Number of successful extensions: 151
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)