Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0044
         (661 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0665 - 10268959-10269148,10269344-10269936,10270572-102710...    30   1.4  
03_05_0440 + 24322332-24322388,24323478-24323615,24323654-243237...    29   4.3  
03_05_0765 - 27536666-27536767,27536854-27536976,27537161-275373...    28   5.7  
11_03_0178 + 11280174-11280342,11280429-11280497,11281494-112817...    28   7.6  

>03_02_0665 -
           10268959-10269148,10269344-10269936,10270572-10271004,
           10271172-10272040,10272121-10272915,10273612-10273829,
           10274931-10275230,10276834-10277161
          Length = 1241

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = -1

Query: 304 FVLRHGVISTYTKIFWGIIKKVPRPLAYCILSI*TLFFVTQSSCLQSVS 158
           F      +++    FW   K+ PRPL +  ++   + F+  +S L++VS
Sbjct: 851 FTFPEDAVTSTGAFFWSAPKRFPRPLQFSTVNSSHIHFILAASILRAVS 899


>03_05_0440 +
           24322332-24322388,24323478-24323615,24323654-24323736,
           24325038-24325128,24326091-24326189,24326356-24326418,
           24327182-24327259,24329354-24329543,24329812-24330065,
           24330159-24330531,24331193-24331276,24332085-24332371,
           24332495-24332542,24333194-24333220,24333951-24333987,
           24334063-24334250,24334343-24334521,24334595-24334877,
           24335481-24335717,24335798-24335988,24336552-24336561,
           24336844-24336984,24337073-24337288,24338437-24338727,
           24338852-24339025
          Length = 1272

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -2

Query: 159 PLHPVSTFISIQLRLQNML*KHYNYISSIK 70
           PLHP+  F    LR QN++ K+YN  S  K
Sbjct: 859 PLHPLENFPE-SLRRQNIVNKYYNSFSEAK 887


>03_05_0765 -
           27536666-27536767,27536854-27536976,27537161-27537355,
           27538144-27538272,27539025-27539066,27539067-27539229,
           27539357-27539492,27539883-27540287,27540419-27540505,
           27540877-27541054
          Length = 519

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +1

Query: 457 YFLHTKVSFLPSKISFYPFGV-IYPGPRPLQYALVY 561
           YF   K    P+  ++YPFGV +Y  P+ L +   Y
Sbjct: 267 YFRDKKKELAPNYAAYYPFGVDVYLSPQKLNHISRY 302


>11_03_0178 +
           11280174-11280342,11280429-11280497,11281494-11281703,
           11282314-11282435,11282436-11282633
          Length = 255

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = -1

Query: 640 LRVIRDXIRKAKLHGEILVIGHATPSYTRGHIATVGDRGKLPQMG 506
           ++V  + + + ++ GE LVI HAT ++      TVG    LP +G
Sbjct: 189 VQVRSNGVAQCRIDGEYLVIVHATAAFV--ETGTVGVELTLPHLG 231


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,535,209
Number of Sequences: 37544
Number of extensions: 369480
Number of successful extensions: 687
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 687
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)