Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0044
         (661 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024828-2|AAU87812.1|  462|Caenorhabditis elegans Hypothetical ...    33   0.24 
U00049-2|AAC47052.2|  327|Caenorhabditis elegans Serpentine rece...    31   0.96 
Z98877-11|CAB63408.1|  887|Caenorhabditis elegans Hypothetical p...    30   1.3  
L23649-2|AAA27911.2|  433|Caenorhabditis elegans Coelomocyte upt...    28   6.8  
AY611497-1|AAT42012.1|  433|Caenorhabditis elegans CUP-4 protein.      28   6.8  
AC006777-8|AAK72305.2|  367|Caenorhabditis elegans Seven tm rece...    28   6.8  
AF024494-12|AAB70332.3|  332|Caenorhabditis elegans Serpentine r...    27   8.9  

>AC024828-2|AAU87812.1|  462|Caenorhabditis elegans Hypothetical
           protein Y55F3BL.2 protein.
          Length = 462

 Score = 32.7 bits (71), Expect = 0.24
 Identities = 18/64 (28%), Positives = 34/64 (53%)
 Frame = +2

Query: 242 FFNYSPKYFCVS*YYPMAKNKKKTKSLLFSIFHIIAHMIIWKEKNIYIFVSFHFF*SSLK 421
           FF +S KY   S  +P   +KKK ++++F   ++   +   K+   +    F FF S+L 
Sbjct: 21  FFQFSAKYLEFSVNFPRKNSKKKLETIIFYEKNVEKTLFFTKQYFKFFNEKFQFF-SNLS 79

Query: 422 SQRF 433
           +++F
Sbjct: 80  NKKF 83


>U00049-2|AAC47052.2|  327|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 2 protein.
          Length = 327

 Score = 30.7 bits (66), Expect = 0.96
 Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 5/49 (10%)
 Frame = +2

Query: 269 CVS*YYPMAKNKKKTKSLLF----SIFHI-IAHMIIWKEKNIYIFVSFH 400
           C S Y P+A+N K     ++    ++ H  I ++++WK +N+Y+  SF+
Sbjct: 21  CDSSYSPLAENLKYLVQFVYLLPAAMLHARILYILLWKHRNLYLKQSFY 69


>Z98877-11|CAB63408.1|  887|Caenorhabditis elegans Hypothetical
           protein Y69H2.11 protein.
          Length = 887

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 527 PVPDRCNMPSCITWCCMANDQY 592
           PVP+ C    C+   C+ NDQY
Sbjct: 296 PVPEACTPSPCLNGTCVLNDQY 317


>L23649-2|AAA27911.2|  433|Caenorhabditis elegans Coelomocyte uptake
           defective protein4 protein.
          Length = 433

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
 Frame = +1

Query: 394 ISFLLIEFKITTIL*KFHF--NIYFLHTKVSFLPSKISFYPFGVIYPGPRPLQYALVYNL 567
           ++F +     T +L   HF   + FLH  V  LP  +S  PF +   G   L Y     L
Sbjct: 298 MTFFIDSLSSTFLLMMLHFYVQLIFLHDLVEKLPLSVSEIPFCIKLIG--ILMYTNGLTL 355

Query: 568 VLH 576
           VLH
Sbjct: 356 VLH 358


>AY611497-1|AAT42012.1|  433|Caenorhabditis elegans CUP-4 protein.
          Length = 433

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
 Frame = +1

Query: 394 ISFLLIEFKITTIL*KFHF--NIYFLHTKVSFLPSKISFYPFGVIYPGPRPLQYALVYNL 567
           ++F +     T +L   HF   + FLH  V  LP  +S  PF +   G   L Y     L
Sbjct: 298 MTFFIDSLSSTFLLMMLHFYVQLIFLHDLVEKLPLSVSEIPFCIKLIG--ILMYTNGLTL 355

Query: 568 VLH 576
           VLH
Sbjct: 356 VLH 358


>AC006777-8|AAK72305.2|  367|Caenorhabditis elegans Seven tm
           receptor protein 221 protein.
          Length = 367

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 19/73 (26%), Positives = 33/73 (45%)
 Frame = +1

Query: 403 LLIEFKITTIL*KFHFNIYFLHTKVSFLPSKISFYPFGVIYPGPRPLQYALVYNLVLHGQ 582
           LLI+ +  +      FNI+ +H  V+  P +I  Y + ++Y     + Y +V  L     
Sbjct: 10  LLIQIQQLSAAFSISFNIFLIHLIVNKSPKQIGVYKYFMLYFSIFEIFYGIVTALT---- 65

Query: 583 *PIFHHVVWLSES 621
              FHH  + + S
Sbjct: 66  -SPFHHTQYATYS 77


>AF024494-12|AAB70332.3|  332|Caenorhabditis elegans Serpentine
           receptor, class u protein28 protein.
          Length = 332

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 17/58 (29%), Positives = 28/58 (48%)
 Frame = +1

Query: 448 FNIYFLHTKVSFLPSKISFYPFGVIYPGPRPLQYALVYNLVLHGQ*PIFHHVVWLSES 621
           F  +FL   V +  + +  +PFG +  G R   + L  N  L     +F+++ WLS S
Sbjct: 170 FFTFFLWPAVGYCTAALGPFPFGSVILGFRESWFGLRNNYFL-----LFNNLFWLSAS 222


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,195,445
Number of Sequences: 27780
Number of extensions: 372240
Number of successful extensions: 848
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 848
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)