Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0044
         (661 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    24   1.5  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    24   1.5  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          23   2.6  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          23   2.6  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          23   2.6  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          23   2.6  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          23   2.6  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          23   2.6  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    23   2.6  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          22   4.5  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   7.9  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   7.9  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    21   7.9  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   7.9  

>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
 Frame = -1

Query: 613 KAKLHGEILVIGH--ATPSYTRGHI 545
           K K+H  I+VIGH  +  S T GH+
Sbjct: 3   KEKIHINIVVIGHVDSGKSTTTGHL 27


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
 Frame = -1

Query: 613 KAKLHGEILVIGH--ATPSYTRGHI 545
           K K+H  I+VIGH  +  S T GH+
Sbjct: 3   KEKIHINIVVIGHVDSGKSTTTGHL 27


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 497 ILEGKNETFVCKKYILK*NFYR 432
           I + +NET  CKKY +  N  R
Sbjct: 197 IEKSENETKTCKKYAISSNSLR 218


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 497 ILEGKNETFVCKKYILK*NFYR 432
           I + +NET  CKKY +  N  R
Sbjct: 197 IEKSENETKTCKKYAISSNSLR 218


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 497 ILEGKNETFVCKKYILK*NFYR 432
           I + +NET  CKKY +  N  R
Sbjct: 197 IEKSENETKTCKKYAISSNSLR 218


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 497 ILEGKNETFVCKKYILK*NFYR 432
           I + +NET  CKKY +  N  R
Sbjct: 197 IEKSENETKTCKKYAISSNSLR 218


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 497 ILEGKNETFVCKKYILK*NFYR 432
           I + +NET  CKKY +  N  R
Sbjct: 197 IEKSENETKTCKKYAISSNSLR 218


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 497 ILEGKNETFVCKKYILK*NFYR 432
           I + +NET  CKKY +  N  R
Sbjct: 197 IEKSENETKTCKKYAISSNSLR 218


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 497 ILEGKNETFVCKKYILK*NFYR 432
           I + +NET  CKKY +  N  R
Sbjct: 197 IEKSENETKTCKKYAISSNSLR 218


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -3

Query: 497 ILEGKNETFVCKKYILK*N 441
           I + +NET  CKKY +  N
Sbjct: 197 IEKSENETKTCKKYAISSN 215


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -1

Query: 385 NIYIFFFPNYHVGYNMK 335
           N+YI  FPN  V Y+++
Sbjct: 137 NVYIRIFPNGSVLYSIR 153


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -1

Query: 385 NIYIFFFPNYHVGYNMK 335
           N+YI  FPN  V Y+++
Sbjct: 137 NVYIRIFPNGSVLYSIR 153


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/29 (31%), Positives = 12/29 (41%)
 Frame = -1

Query: 379 YIFFFPNYHVGYNMKDAEKKRFRFFFVLR 293
           Y F  P+ H      D   K + +FF  R
Sbjct: 454 YFFICPSIHFAQLFADRGMKVYYYFFTQR 482


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/29 (31%), Positives = 12/29 (41%)
 Frame = -1

Query: 379 YIFFFPNYHVGYNMKDAEKKRFRFFFVLR 293
           Y F  P+ H      D   K + +FF  R
Sbjct: 454 YFFICPSIHFAQLFADRGMKVYYYFFTQR 482


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,486
Number of Sequences: 438
Number of extensions: 4765
Number of successful extensions: 14
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19855845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)