Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0043
         (646 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292366-1|CAL23178.2|  379|Tribolium castaneum gustatory recept...    21   6.6  
AM292329-1|CAL23141.2|  379|Tribolium castaneum gustatory recept...    21   6.6  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    21   8.7  

>AM292366-1|CAL23178.2|  379|Tribolium castaneum gustatory receptor
           candidate 45 protein.
          Length = 379

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +3

Query: 219 NNI**MTEILTSISSHNVK*MPIIFVISIYYVNFSVLGSVF 341
           NN+  + E+L +  SH    +  + V    YV   +L +VF
Sbjct: 112 NNLQYIDEVLKNRDSHETNLLRNVSVQFFVYVILYILATVF 152


>AM292329-1|CAL23141.2|  379|Tribolium castaneum gustatory receptor
           candidate 8 protein.
          Length = 379

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +3

Query: 219 NNI**MTEILTSISSHNVK*MPIIFVISIYYVNFSVLGSVF 341
           NN+  + E+L +  SH    +  + V    YV   +L +VF
Sbjct: 112 NNLQYIDEVLKNRDSHETNLLRNVSVQFFVYVILYILATVF 152


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -2

Query: 465 MIFLLSVYNFFVLMKNYVRQLL 400
           ++FLL +Y+FF     +   LL
Sbjct: 160 LLFLLCIYHFFCAFIIFTMHLL 181


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,972
Number of Sequences: 336
Number of extensions: 2968
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16552695
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)