Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0043
         (646 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces...    27   2.3  
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf...    27   3.1  
SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa...    25   7.1  

>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1154

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +3

Query: 75   HFCKR*LKLFYTSCDKLLLWHIQIKNVPINVNN 173
            HFCK  L+LF+++   ++ +    +NV IN  N
Sbjct: 1070 HFCKSNLQLFFSTDTYVIFFEPNTENVYINSYN 1102


>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
           Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1339

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +1

Query: 16  FLSMIXRHSSRALEVFKCDFTFVRDD*NYFIQVVTNCYYG 135
           + S     S R+++ FK DFT   D+      V+T  YYG
Sbjct: 872 YFSSTEHASKRSVKRFKNDFTSDEDETLIRAVVITQIYYG 911


>SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 707

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -2

Query: 462 IFLLSVYNFFVLMKNYVRQLLMTLNHRAH 376
           +FLL   + +++   Y+RQL +TL +  H
Sbjct: 390 LFLLDAESCYLIGFRYIRQLAITLRNTIH 418


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,386,646
Number of Sequences: 5004
Number of extensions: 43969
Number of successful extensions: 75
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)