Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0042
         (664 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4FLL9 Cluster: 50S ribosomal protein L4; n=2; Candidat...    35   1.5  
UniRef50_A0CXR3 Cluster: Chromosome undetermined scaffold_30, wh...    34   2.7  
UniRef50_Q8NUE6 Cluster: MWP016 protein; n=5; Staphylococcus aur...    33   4.6  

>UniRef50_Q4FLL9 Cluster: 50S ribosomal protein L4; n=2; Candidatus
           Pelagibacter ubique|Rep: 50S ribosomal protein L4 -
           Pelagibacter ubique
          Length = 207

 Score = 35.1 bits (77), Expect = 1.5
 Identities = 17/37 (45%), Positives = 21/37 (56%)
 Frame = -2

Query: 555 KEHIQYMYRKYNNEAPKYLIASLSTKKKSLNNFLIYS 445
           K  + Y  RK N    K  IASL T+K  LNN +I+S
Sbjct: 91  KGELAYKKRKLNKSEKKLSIASLITEKNKLNNLIIFS 127


>UniRef50_A0CXR3 Cluster: Chromosome undetermined scaffold_30, whole
           genome shotgun sequence; n=4; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_30,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 1104

 Score = 34.3 bits (75), Expect = 2.7
 Identities = 20/65 (30%), Positives = 37/65 (56%), Gaps = 6/65 (9%)
 Frame = -3

Query: 383 LSNTYNILNIFFSCNVIAIHVININY*QLTIKQYILQ------FIVLMFEYANDKLDLFK 222
           L+   N  N  F  N++ I V NINY Q  + + +        +++L+ +YAND + +F+
Sbjct: 47  LNYKLNHSNFHFLFNLLIIFVQNINYHQQILFKIVCSIITYSTYLLLISKYANDLILVFQ 106

Query: 221 ILLYL 207
           ++LY+
Sbjct: 107 VVLYV 111


>UniRef50_Q8NUE6 Cluster: MWP016 protein; n=5; Staphylococcus
           aureus|Rep: MWP016 protein - Staphylococcus aureus
           (strain MW2)
          Length = 644

 Score = 33.5 bits (73), Expect = 4.6
 Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
 Frame = -3

Query: 425 NGYYIFRFMV*NIILSNTYNIL--NIFFSCNVIAIHVININY*QLTIKQYILQFIVLMFE 252
           +G+   R +  NI +   Y ++   IFF  N++ IH+ N+   +L    +I +FIVL+F 
Sbjct: 190 HGFSTTRIIFHNIHIKIIYWLVLTAIFFIANILIIHIANL---ELDFLMFIRKFIVLLFV 246

Query: 251 YA 246
           +A
Sbjct: 247 FA 248


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 470,289,817
Number of Sequences: 1657284
Number of extensions: 7484275
Number of successful extensions: 19094
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 18233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19086
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 50413227838
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)