Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0042
         (664 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    22   3.9  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    21   6.8  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +1

Query: 505 FWCFIVVFAVHIL 543
           F+C  ++F VH+L
Sbjct: 149 FYCAFIIFTVHLL 161



 Score = 21.8 bits (44), Expect = 5.2
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 490 RRN*IFWCFIVVFAVHILDVFFLING 567
           RR   F+C  + F VH+L  F L +G
Sbjct: 54  RRIYYFYCVSITFNVHLL--FLLCSG 77



 Score = 21.4 bits (43), Expect = 6.8
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = +1

Query: 502 IFWCFIVVFAVHIL 543
           +F+C  ++F VH L
Sbjct: 84  LFYCPFIIFTVHFL 97


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -2

Query: 564 IYKKEHIQYMYRKYN 520
           +YK+ H Q+ Y K N
Sbjct: 230 LYKRPHDQWAYEKLN 244


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,643
Number of Sequences: 336
Number of extensions: 2341
Number of successful extensions: 8
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17177325
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)