Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0042
         (664 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1687.20c |mis6||inner centromere protein Mis6|Schizosaccharo...    26   4.2  
SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr...    26   5.6  
SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2 alpha-1,...    25   7.4  

>SPAC1687.20c |mis6||inner centromere protein
           Mis6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -2

Query: 537 MYRKYNNEAPKYLIASLSTKKKSLNNFLIYSFIY 436
           +Y+K  N A  YL+A + T K+   + ++ S+ Y
Sbjct: 174 LYQKPGNTADPYLLALILTYKQHFPDVIVGSYTY 207


>SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 131

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +3

Query: 513 LHCCICGTYIG 545
           +HCC C TYIG
Sbjct: 70  IHCCRCHTYIG 80


>SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2
           alpha-1,3-glucosyltransferase Alg12 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 546

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 11/19 (57%), Positives = 15/19 (78%), Gaps = 1/19 (5%)
 Frame = -2

Query: 459 FLIYSFIYIQKKRLL-YIP 406
           FL+ SF+YI+  RLL Y+P
Sbjct: 270 FLLISFVYIKPARLLIYVP 288


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,121,592
Number of Sequences: 5004
Number of extensions: 36338
Number of successful extensions: 102
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)