Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0039
         (652 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz...    30   0.25 
SPBC15D4.11c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    27   2.3  
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p...    27   2.3  
SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux transporte...    27   2.3  
SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces...    26   4.1  
SPAC17G8.02 |||uridine ribohydrolase |Schizosaccharomyces pombe|...    25   7.2  
SPBC4.06 |||acid phosphatase |Schizosaccharomyces pombe|chr 2|||...    25   9.5  
SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase ...    25   9.5  
SPAP7G5.02c |gua2||GMP synthase [glutamine-hydrolyzing] |Schizos...    25   9.5  

>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1273

 Score = 30.3 bits (65), Expect = 0.25
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +2

Query: 197 H*INRIKYEGVCSHRCLSGLGVLAEEDSC-YQNVDQGC 307
           H I+R++ +GVC  RCL  L  LA E    Y  ++ GC
Sbjct: 446 HAISRVEAQGVCVDRCLFQLASLAYEFLVRYGYINYGC 483


>SPBC15D4.11c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 263

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
 Frame = +1

Query: 418 LPLSPVGLLLQQLPDEQGRIREALQEIIGRSWEKTIGLIKHVTKR--GGKMDFSSHTTLK 591
           +P S    LL+ L DEQG   + ++ +I RSW K     KH      G  +   S TT K
Sbjct: 201 VPASIKSSLLEFL-DEQGITVKFMKALISRSWRKENVSYKHWIHNIIGFILPSESSTTKK 259

Query: 592 GD 597
            D
Sbjct: 260 SD 261


>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1098

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +1

Query: 142 KAVLSTYVKRTCYFFENS 195
           KAV   YV+R CY+ EN+
Sbjct: 271 KAVFDKYVERECYYSENA 288


>SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 531

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
 Frame = +2

Query: 374 ANELKALASLY--LKRSYHYLLSASYF-NNYQTNREGFAKLFRKLSDDRGRKPLV 529
           A ++  +ASLY  +   +  + +ASY    Y      F  L+ +LSD  GR+P V
Sbjct: 45  ALDMTIVASLYPVIGSEFKLMNNASYIVTAYLITNTAFQPLYGRLSDIFGRRPTV 99


>SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 497

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 18/64 (28%), Positives = 28/64 (43%)
 Frame = +1

Query: 334 QRVLRPIQGQPRCSERTEGISLTVFETFLPLSPVGLLLQQLPDEQGRIREALQEIIGRSW 513
           +R+ R     P  SE   G S T F          + L+++PD+QG I  A   +   S+
Sbjct: 20  RRLSRSSTITPSVSEYRSGFSKTAFGN--------IELEEIPDKQGNITRATSNLESNSY 71

Query: 514 EKTI 525
            K +
Sbjct: 72  PKAL 75


>SPAC17G8.02 |||uridine ribohydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 330

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 17/48 (35%), Positives = 20/48 (41%)
 Frame = +3

Query: 60  NYNLLSLCGRFHLDESLLEVAFCASVCKGSTFDIRQTHLLFFREFATK 203
           NYN+   C   H D   L +A CA  CK     +   H     EF TK
Sbjct: 16  NYNIWIDCDPGHDDVVALTLAACAGHCK--ILGVSTVHGNTTLEFTTK 61


>SPBC4.06 |||acid phosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 462

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 14/44 (31%), Positives = 19/44 (43%)
 Frame = +2

Query: 449 NNYQTNREGFAKLFRKLSDDRGRKPLVS*STSLRGVGRWTSRVT 580
           N    N+    KLF   S D     +V+ S S R +  W  R+T
Sbjct: 370 NQSGDNKTTDLKLFSDESTDASNSAIVAASNSARDMSDWYVRIT 413


>SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase
           Cho2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 905

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +3

Query: 177 LFFREFATK*IASNMKVYALIVACLAWVCWPR 272
           L FR F    +  +   Y L+   LAW CWP+
Sbjct: 205 LVFRHFVDLILMCDFCSYILMG--LAWTCWPK 234


>SPAP7G5.02c |gua2||GMP synthase [glutamine-hydrolyzing]
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
 Frame = +1

Query: 493 EIIGRSWEKTIGLIKHVTKRGGKMDFS---SHTTLKGDKGSNYTVEVGH 630
           E IGR+      +I HVTK    + F    +HT L      N+ +E+ H
Sbjct: 163 ETIGRTKNSPFAVIAHVTKPIIGLQFHPEVTHTPLGLQLIKNFAIEICH 211


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,417,698
Number of Sequences: 5004
Number of extensions: 48834
Number of successful extensions: 137
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)