Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0039
         (652 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0737 + 22662657-22662733,22662843-22662930,22663873-226639...    30   1.8  
11_01_0040 - 304439-304482,304589-304652,304766-304831,305509-30...    29   3.2  
05_03_0672 + 16835442-16835501,16835620-16835733,16835818-168359...    29   4.2  
02_05_1279 + 35427916-35429511                                         29   4.2  
02_04_0405 + 22637025-22637130,22637246-22637403,22637934-226380...    28   7.4  
04_04_1696 + 35448667-35449641,35449726-35450562,35450667-354510...    27   9.8  

>12_02_0737 +
           22662657-22662733,22662843-22662930,22663873-22663925,
           22664067-22664542,22664645-22664805,22664889-22665086,
           22665324-22665531,22665632-22665756,22665897-22666080,
           22666184-22666344
          Length = 576

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 27/97 (27%), Positives = 42/97 (43%)
 Frame = +2

Query: 230 CSHRCLSGLGVLAEEDSCYQNVDQGCRRTLSLPHCSAYYGQFKDNHVVANELKALASLYL 409
           CSHR LS    +   D  +   DQGC  +    +      + K   V+  EL+    L L
Sbjct: 123 CSHRLLSAKIRVVVLDGDFNKNDQGCWTSEEFRN-HIVRPRDKVGTVLTGELE----LSL 177

Query: 410 KRSYHYLLSASYFNNYQTNREGFAKLFRKLSDDRGRK 520
           K    Y+  A++ +N +  R G  +L   + DD G +
Sbjct: 178 KNGEAYIHDATFVDNSKFMRSGKFRLGVMVIDDLGER 214


>11_01_0040 -
           304439-304482,304589-304652,304766-304831,305509-305640,
           305744-305804,305885-306018,306310-306654
          Length = 281

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
 Frame = +2

Query: 392 LASLYLKRSYHYLLSASYFNNYQTNREGFAKLFRKLSDDR--GRKPLVS*STSLRGVGRW 565
           L S+    SY Y    +YF+      +GFAK F++ SD+     + L+       G  R 
Sbjct: 130 LCSVEYNASYAYHSLFAYFDRDNVALKGFAKFFKESSDEERDHAEKLIKYQNMRGGRVRL 189

Query: 566 TSRVTP 583
            S VTP
Sbjct: 190 QSIVTP 195


>05_03_0672 +
           16835442-16835501,16835620-16835733,16835818-16835988,
           16836090-16836185
          Length = 146

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = +1

Query: 487 LQEIIGRSWEKTIGLIKHVTK-RGGKMDFSSHTTLKGDKGSNYTVE 621
           L  ++ R WE+ +GL++  TK +G + DF+    L  D+G   TVE
Sbjct: 23  LDRLLARMWEE-MGLVRVYTKPQGQQPDFTDPVVLSTDRG-GCTVE 66


>02_05_1279 + 35427916-35429511
          Length = 531

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +1

Query: 412 TFLPLSPVGLLLQQLPDEQGRIREALQEIIGRSWEKTIGLIKHVTKRG 555
           T L LS   L+L   P+ Q  +RE + E+ GRS       +  +TK G
Sbjct: 337 TALALSWTLLMLAAHPEWQAAVREEVVEVAGRSGPLDAAALGKLTKMG 384


>02_04_0405 +
           22637025-22637130,22637246-22637403,22637934-22638099,
           22638200-22638517,22638906-22639117
          Length = 319

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 17/56 (30%), Positives = 24/56 (42%)
 Frame = +2

Query: 245 LSGLGVLAEEDSCYQNVDQGCRRTLSLPHCSAYYGQFKDNHVVANELKALASLYLK 412
           L  LG   E  +CY  V +  + T     C+  YG   D +    +L+  A LY K
Sbjct: 253 LQRLGKYREAMNCYYKVLELSKETGEDSGCTEAYGAIADCYTELGDLERAAKLYDK 308


>04_04_1696 +
           35448667-35449641,35449726-35450562,35450667-35451001,
           35451371-35451497,35451594-35451752,35451872-35453053,
           35453164-35453424,35453513-35453761
          Length = 1374

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/53 (26%), Positives = 23/53 (43%)
 Frame = +1

Query: 433 VGLLLQQLPDEQGRIREALQEIIGRSWEKTIGLIKHVTKRGGKMDFSSHTTLK 591
           + +L  +     G   E L+ +   SWE  + +  H    G  MD +SH  +K
Sbjct: 92  LNMLASRFLASAGVEEEWLEVVTALSWEAALLIQTHACTAGNDMDPASHVKIK 144


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,816,680
Number of Sequences: 37544
Number of extensions: 317823
Number of successful extensions: 864
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 864
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)