Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0039
         (652 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8257| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.1  
SB_18191| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  

>SB_8257| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 710

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
 Frame = +1

Query: 364 PRCSERTEGISL-TVFETFLPLSPVGLLLQQLPDEQGRIREALQEIIGRSWEKTIGLIKH 540
           PR S   +G++L +VF   + LS V   ++ LP  Q    E ++     +  KTI    +
Sbjct: 406 PRSSRIAKGLALWSVF--IITLSTVSFCVETLPQFQHDKIEKIRHATSHAHNKTILQRVN 463

Query: 541 VTKRGGKMDFSSHTTLKGDKGSNYTVEVGH 630
           VTK    ++   + T++G+  +  T  V H
Sbjct: 464 VTKGNTTVEVLVNKTIRGESTTWSTEMVDH 493


>SB_18191| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1008

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +2

Query: 395 ASLYLKRSYHYLLSASYFNNYQTNREGFAKLFRKLSDD 508
           +++ L    HYL S + F NYQ   +G   LF++  D+
Sbjct: 326 STILLNAGLHYLESTN-FTNYQRLIDGIVLLFKRAKDE 362


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,489,187
Number of Sequences: 59808
Number of extensions: 373218
Number of successful extensions: 901
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 821
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 901
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)