Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0039
         (652 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92803-13|CAB07249.2|  331|Caenorhabditis elegans Hypothetical p...    30   1.2  
AL021482-4|CAA16341.2|  331|Caenorhabditis elegans Hypothetical ...    30   1.2  
U39678-4|AAK39211.2|  330|Caenorhabditis elegans Hypothetical pr...    30   1.6  
Z81070-4|CAB03003.2|  474|Caenorhabditis elegans Hypothetical pr...    28   6.6  
Z32683-12|CAA83624.2|  186|Caenorhabditis elegans Hypothetical p...    28   6.6  
U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy ch...    28   6.6  
U40933-2|AAL27242.1|  158|Caenorhabditis elegans Hypothetical pr...    28   6.6  
L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy ch...    28   6.6  

>Z92803-13|CAB07249.2|  331|Caenorhabditis elegans Hypothetical
           protein K01G5.9 protein.
          Length = 331

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +2

Query: 212 IKYEGVCSHRCLSGLGVLAEEDSCYQNVDQGCRRTLSLPHCSAYYGQ 352
           +K+ G   H C+ G G  +E     +  DQ   RT+S+  CS  +G+
Sbjct: 182 LKHSGRLGHSCVYGSGTWSERRQYEEPFDQVSERTISI--CSTGHGE 226


>AL021482-4|CAA16341.2|  331|Caenorhabditis elegans Hypothetical
           protein K01G5.9 protein.
          Length = 331

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +2

Query: 212 IKYEGVCSHRCLSGLGVLAEEDSCYQNVDQGCRRTLSLPHCSAYYGQ 352
           +K+ G   H C+ G G  +E     +  DQ   RT+S+  CS  +G+
Sbjct: 182 LKHSGRLGHSCVYGSGTWSERRQYEEPFDQVSERTISI--CSTGHGE 226


>U39678-4|AAK39211.2|  330|Caenorhabditis elegans Hypothetical
           protein C39D10.3a protein.
          Length = 330

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
 Frame = +1

Query: 226 CMLSSLPVWLGCAGRGRLMLSERRPRMQT----DFKSAALQRVLRPIQGQP 366
           C + ++P  L  AGR  LML  ++  M+T    DFKSA L   L P+  +P
Sbjct: 102 CDIIAIPGKLEIAGR--LMLVTKKHHMETDSILDFKSAILPFALDPLSNEP 150


>Z81070-4|CAB03003.2|  474|Caenorhabditis elegans Hypothetical
           protein F26E4.5 protein.
          Length = 474

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 190 NSPLNKSHQI*RCMLSSLPVWLGCAG 267
           NS L KSH + +  L  +  W GC+G
Sbjct: 58  NSSLVKSHHVLKIKLKKITNWSGCSG 83


>Z32683-12|CAA83624.2|  186|Caenorhabditis elegans Hypothetical
           protein R07E5.4 protein.
          Length = 186

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 23/86 (26%), Positives = 38/86 (44%)
 Frame = +2

Query: 329 HCSAYYGQFKDNHVVANELKALASLYLKRSYHYLLSASYFNNYQTNREGFAKLFRKLSDD 508
           HC+  +G  + +    N L+  A  Y  R +  L++        T REGF+K   +LS +
Sbjct: 72  HCTCMHGATECD---LNRLQNCAISYFPRRHLGLVTC--LQGLTTLREGFSKCLSRLSPN 126

Query: 509 RGRKPLVS*STSLRGVGRWTSRVTPH 586
             RK +   +T    +  + S V  H
Sbjct: 127 TQRKLIECATTQTGELLNYYSMVNTH 152


>U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy chain
            protein 1 protein.
          Length = 4568

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 18/58 (31%), Positives = 28/58 (48%)
 Frame = +2

Query: 119  RLLRQCV*RQYFRHTSNALVIFSRIRH*INRIKYEGVCSHRCLSGLGVLAEEDSCYQN 292
            ++LR  +  ++F H  NA + F   RH + RI+Y      R    L  L  +D C +N
Sbjct: 3465 QMLRDEIFHKWFNHVVNAGLHF---RHDLARIEYLSTVDDRLQWQLNSLPVDDLCTEN 3519


>U40933-2|AAL27242.1|  158|Caenorhabditis elegans Hypothetical
           protein F20D12.7 protein.
          Length = 158

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -1

Query: 490 EELRESFPVRLVVVEVGGRQEIMVGTFQIQ*G 395
           EE+ E   V LV++ +GGR   +VGT ++  G
Sbjct: 87  EEITEPSSVLLVMITMGGRMANVVGTMKLYKG 118


>L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy chain
            protein.
          Length = 4568

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 18/58 (31%), Positives = 28/58 (48%)
 Frame = +2

Query: 119  RLLRQCV*RQYFRHTSNALVIFSRIRH*INRIKYEGVCSHRCLSGLGVLAEEDSCYQN 292
            ++LR  +  ++F H  NA + F   RH + RI+Y      R    L  L  +D C +N
Sbjct: 3465 QMLRDEIFHKWFNHVVNAGLHF---RHDLARIEYLSTVDDRLQWQLNSLPVDDLCTEN 3519


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,360,209
Number of Sequences: 27780
Number of extensions: 271023
Number of successful extensions: 732
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 732
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)