Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0031
         (661 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC713.08 |tom13||mitochondrial TOM complex subunit Tom13|Schiz...    25   7.3  
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb...    25   7.3  
SPAC1D4.03c |aut12||autophagy associated protein Aut12|Schizosac...    25   9.7  
SPAC11G7.05c |||[acyl-carrier protein] S-malonyltransferase Mct1...    25   9.7  

>SPBC713.08 |tom13||mitochondrial TOM complex subunit
           Tom13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 71

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 352 EIFAHHYLHIHEWPIGEDRVKS 417
           EIFAH ++H   W  G  R+ S
Sbjct: 41  EIFAHAFIHSLGWAPGHTRIYS 62


>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1389

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +1

Query: 352 EIFAHHYLHIHEWPIGEDRVKSKIEIDPATQMDAGV 459
           E  A +Y+H+ E+       K+ +E+    Q D GV
Sbjct: 385 ECLAKYYIHLKEYEYAIGLSKAALEVLKRLQQDTGV 420


>SPAC1D4.03c |aut12||autophagy associated protein
           Aut12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -1

Query: 589 YVYIYKLF*CKNLKLTLNQSKA 524
           Y+YIY  F CK+  L +  S++
Sbjct: 338 YIYIYSYFLCKDTVLIMGSSES 359


>SPAC11G7.05c |||[acyl-carrier protein] S-malonyltransferase Mct1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 318

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -2

Query: 255 GEASKIFAPSLLL*YWSDSGSRYLPVIGN 169
           GE     +P L    ++DSG R+LP+I N
Sbjct: 226 GETEFNISPELC---YTDSGKRFLPIISN 251


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,622,480
Number of Sequences: 5004
Number of extensions: 52452
Number of successful extensions: 115
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)